SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene16095

Length: 1587 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene16095 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	plastid protein	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	GO:0002103	Biological Process	81%
Blast2go	plastid organization	GO:0009657	Biological Process	81%
Blast2go	chloroplast	GO:0009507	Cellular Component	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NL07

Fln msg:

Fln protein: MVSVISTEPACGSFYSTSNASAAMPLVLSRAIRLRPIIAFSASSSRRLSSQSPHPISSRSARLSSPLFNNPLVAISHGVVQMPKAPVSRLTVRCKVTNNSGYSPLNNSSPNWSDRPPVETAPLFPGCDYEHWLIVMDPPNEGKATKQEMIDCYIQTLAKVLGSEEAAKKSIYNVSCERYFGFGCQIDEETSNKLVGLPGVVFVLPDSYVDAEYKDYGGELLVDGKIVERSPERQRRVTPAPQRNNDRPRYNDRTRYVRRRENQNQGR*

Protein Length: 269

Fln nts: GTCAAAGATGAATGATTAGAGCATTGATTTGTAATGGTAAATCTGCGTCGTGACCTTGGCTGTCACTCAAATCCATGTCCATCCATTCCCAATCTAATTTTATCGTTCCGAGTTCTTGGCGGAGGACGCTAAGATAATCTCTAACTAACTGCAATATTCTGCAACATCTGACAATTCACAACTCTTAAACCCTATCAATTCAACTCTATCTCTAACCCGCAAAACCTCAACCCTTC_-_ATGGTTTCTGTAATCAGCACAGAGCCTGCCTGCGGGTCGTTCTACTCTACGTCCAACGCATCGGCCGCCATGCCTCTCGTCCTCTCTCGTGCAATTCGCCTGCGCCCGATTATAGCATTCTCCGCCTCCTCTTCAAGGAGGCTTTCATCACAATCACCACACCCGATATCCTCCCGCTCTGCCCGTCTATCTTCTCCGCTGTTCAACAACCCTTTGGTCGCCATTTCCCATGGAGTCGTCCAGATGCCTAAAGCTCCAGTGAGCCGGCTCACAGTGCGCTGCAAGGTCACAAACAATTCAGGGTATTCCCCGCTCAACAATTCATCGCCGAACTGGAGCGACCGCCCGCCCGTGGAGACTGCGCCCCTTTTCCCCGGCTGCGACTATGAGCACTGGCTTATTGTCATGGACCCTCCCAATGAGGGTAAGGCCACCAAGCAGGAAATGATCGACTGCTATATCCAAACCCTCGCTAAGGTGCTGGGAAGCGAGGAAGCAGCGAAAAAATCTATTTACAATGTGTCTTGCGAACGATACTTTGGTTTTGGATGCCAGATCGACGAGGAAACCTCCAATAAACTCGTGGGGCTTCCTGGAGTGGTGTTTGTTCTACCAGATTCATACGTGGATGCAGAATATAAGGATTATGGAGGGGAACTATTGGTTGATGGAAAGATAGTTGAGAGATCTCCAGAAAGACAGCGGCGTGTCACTCCTGCTCCTCAGCGGAACAATGATAGACCCAGATACAATGATAGAACAAGATATGTCAGACGAAGGGAAAATCAGAATCAAGGTCGTTGA___TCAACGTTCTCTCCTAAAACTAGAGTGAATAGACAATTGATGGTATACGATGGACTTGAACAGTTGTAATATCCTGATTGTGGTAGAATGCTACTTCAAAGTGATCATCATTAGAACATCCTATATTGGTTGTTTGCTGAGCACCTTCTTAATATAGGGGGTTTTAACTGTCTGTTAATGTGGGTGAAGTCTTGTTTTGCTGAAGAACATGTTATCAGAGTTACACATGTAAAGCTAGCATTTAAAGTGCCCTCTTATATGGACTTCATTTAATGGATAGTTTATGAATGCGTTAACTTGTAAAGGAGACACTAATGGCAAGGCTACATATTTGGAATTCTTCGAAGACAAGTCTGGGGTATTATGGTTTCCATCTTACATTGGTGAGACTATTTCATGCTCTAGGGTGGTCTGTGTTTGGTTTTACAATGGTGTTGTTTTCTTTCAAAATAGAATTTGGAAATTACTTTGGTTTCTAAATTTTTCTTTCTTTTGGTTGAGTGTCACAGGAAATGCCTTTGTTATGGTAATGCAACATGGCTTTTTT

Fln Alignment:

Contig16095___MVSVISTEPACGSFYSTSNASAAMPLVLSRAIRLRPIIAFXXXXXXXXXXXXXXXXXXXSARLSSPLFNNPLVAISHGVVQMPKAPVSRLTVRCKVTNNSGYSPLNNSSPNWSDRPPVETAPLFPGCDYEHWLIVMDPPNEGKATKQEMIDCYIQTLAKVLGSEEAAKKSIYNVSCERYFGFGCQIDEETSNKXXXXXXXXXXXPDSYVDAEYKDYGGELLVDGKIVERSPERQRRVTPAPQRNNDXXXXXXXXXXXXXRENQNQGR
A9NL07_______________MVSVISTERACG--FLSSNASVAMPLVLPRAMRLRPVMAFCSSSARRLSSQSPHPIPSLSARLSSPLFNNPLVAVSHGAVQAPKVSVSRLTVRCKVTNNSGYSPLSNSSPNWSDRPPVETAPLFPGCDYEHWLIVMDPPNEGKATKQEMIDCYIQTLAKVLGSEEAAKKSIYNVSCERYFGFGCQIDEETSNKLVGLPGVVFVLPDSYVDAEYKDYGGELLVDGKIVERSPERQRRVTPAPQRNNDRPRHNDRTRYVRRRENQNRGR

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
1375	95	4			0.996252
1376		6	93		0.999999
1377	95	4			0.996252
1378		6	91		0.999996
1414	4	2		94	0.967557
1415	4		2	94	0.967557
1422		4		96	0.99411
1424	4			95	0.995055
1425		4		95	0.995055
1476		95		4	0.995881
1477			4	95	0.995881
1478	4	95			0.995881
1482	95	4			0.995881
1483	4	95			0.995881
1485	95	4			0.996599
1486		4		95	0.996599
1488	93	4			0.983471
1489	90	4	4		0.938371
1490	95		5		0.997749
1492		5		94	0.9982
1497		5		94	0.9982
1519		25	25	25	0.997389
1524		20		80	0.995493
1528		80		20	0.995493
1542		75		25	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain