SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene16065

Length: 1424 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene16065 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=Polyubiquitin; Contains: RecName: Full=Ubiquitin; Flags: Precursor sp\|P0CH05.1\|UBI2P_PETCR RecName: Full=Polyubiquitin; Contains: RecName: Full=Ubiquitin; Flags: Precursor emb\|CAA45621.1\| polyubiquitin [Petroselinum crispum] emb\|CAA45622.1\|	-	-	97%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	polyubiquitin	-	-	98%

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin	IPR000626	-	-
Sma3	Ribosomal protein L40e	IPR001975	-	-
Sma3	Ribosomal protein S27a	IPR002906	-	-

Full-Lengther Next Prediction

SNPs (tot: 43)

Position	A %	C %	G %	T %	Probability
120	16	83			0.994512
192	87			12	0.992554
534	14			85	0.999981
552	11			88	0.923564
555	88		11		0.923564
559	12			87	0.992554
565	88		11		0.923564
578		14		85	0.993533
582			85	14	0.993533
954	11	88			0.923564
956	11		88		0.923564
958	88			11	0.923564
959	11			88	0.923564
961	11	88			0.923564
982	87	12			0.992554
986	12		87		0.992554
989			87	12	0.992554
990		12	75	12	0.975346
991		28	71		1.0
992	16			83	0.994512
993	16		83		0.994512
995	83		16		0.994512
997		16		83	0.994512
998	12	87			0.992554
999		87		12	0.992554
1000			12	87	0.992554
1001	12			87	0.992554
1080			83	16	0.994512
1324	8	16		75	0.99999
1333		16	83		0.999991
1339	18	63		18	0.999997
1348	18		81		0.999994
1354	70		30		1.0
1357	20			80	0.999996
1371	12	87			0.992554
1374	87			12	0.992554
1375	87			12	0.992554
1377	28			71	1.0
1378		16	83		0.994512
1382	20		80		0.995493
1383		20		80	0.995493
1384	20	80			0.995493
1390	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain