SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene16032

Length: 2281 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene16032
ATGGGGATCCCAACCACTAAACGGAACATTCGGATCCCTCCTTACAAGTCCCAATTTTCTGAGACTACTAGACTTGGAGTTCCTAAGCCCTCCCGACTACTGTGCCGGAATACCGGGATTTAGCATTTTGGTTAAGCATTTGACAATAATTAGACATCTATAAATTCATTTGAGAAAATTTAATTTGCATTCTTTTAAAAGGGGAATATTTAAGGGTAAGGGTCAACCTGGACTCCATTGACACAGTCAGTCACTCTTATTTCGGGCCATTAATGAAAACCTTGCCACTATAATTCCTCCCCGGGCATAGGCCACACCCGCGCCGGTTCATATAAACCCTCCGCTGTAACGCCATTCGCGTGAATACTTTTTTAGATCACAGAACAAATCTTACAATTTTTGTCGATCAATTTCCTTAGAGGGCCATGGATGAGGAATACGATGTGATAGTGCTGGGCACTGGTCTGAAAGAATGCATCCTCAGCGGTCTCCTTTCTGTGGATCGGCTCAAGGTCCTCCACATGGACAGAAATGATTACTATGGAGGAGATTCTACTTCTCTTAATCTCATCCAGCTTTGGAAGAAGTTCCGAGGTAACGATAAGCCTCCTGCTCATCTCGGATCCAGTAGAGACTACAATGTTGATATGATCCCTAAGTTTATGATGGCAAATGGTAGTTTGGTGCGAGTCCTCATTCACACAGATGTTACAAAATATTTGTATTTTAAGGCTGTGGACGGTAGTTATGTATACAATAAAGGAAAGATATACAAAGTCCCAGCGACTGATGTGGAAGCTCTAAAATCTCCTCTTATGGGAATATTTGAAAAGCGTCGTGCTAGAAAGTTCTTTATTTATGTTCAAAATTATGACGAGAATGATCCAACAACACATGATGGCATGGACTTGACAAGAGTAACAGCAAGAGAACTTATTGCGAAATATGGATTAGATGATAATACTGTAGATTTCATTGGCCATGCATTGGCACTTCATCGGGATGACCGTTATCTATATGAGCCTGCATTAGAGACTGTAAAAAAATAAAGCTATACGAAGAATCTCTTGCTCGTTTTCAAGGAGGGTCGCCATACATATACCCATTGTATGGGTTGGGTGAACTACCTCAGGGATTTGCACGTCTTAGTGCTGTCTATGGAGGAACATACATGCTGAACAAACCGGAGTGCAAGGTTGAGTTTGATGAAGAAGGTAAGGTGTGTGGTGTGACATCTGAAGGGGAGACAGCCAGATGCAAAAAAGTAGTTTGTGATCCATCATATTTACCTAACAAGGTCAAGAAAATTGGAAAGGTTGCTCGTGCAATTTGTGTAATGAGCCACCCTATCCCAAACACAAATGACTCCCAATCAGTACAGATAATTCTGCCTCAGAAGCAACTTGGACGCAAGTCTGACATGTATGTATTTTGCTGTTCTTATTCACATAATGTTGCTCCCAAAGGGAAGTACATTGCTTTTGTTTCGGCTGAGGCAGAAACAGATCAACCAGAGGTAGAATTGCAACCGGGAATAGCTCTTCTTGGACCTGTTGATGAGATGTTCTTTGATACATATGATAGATTTGCTCCTGTTAATGAGCCTTCTCTTGACAATTGCTTCATATCCACTAGCTATGATGCGACAACACATTTTGAGACAACTGTGCAGGATGTTCTTGCCATGTACACCAACATAACTGGAAAGGTTTTGGACCTAAGTGTTGACCTAAGTGCTGCAAGTGCGGCTGAAGAATAATGGGCTGTAGCATATCAACCTTTAGTTGGGTTACACATTCCTCTAAGGCTGTACTTGTTTTGATATGATCTACAGTGTGTTGAAGTTTTAGTGTTTGTATGTATTTGGGAATCACGCCTTTACCTGGTGTTTTAATATCTGGAATGTTCAGGTCCAGACATAGAACACTGTTTTTTCAGCTGTTCATTCAAATCACTGGCTTTTATATCATTGATATGTATGAATTTGTCTGCAATAATTGTTCAGTGTTCAGTTTGATAGGAAGACAAGACGTAGAGGTTCTGACTGTGGGTGTTGGTAATCATGTAATATTTTCATCCATGCTTGAAACTCTGCTATGATTTATGGTGCGGGATATTAGTATTTAATCATAAAAATCACTAATATTCAGATGGTAATTTGTATTTGAAGTGAACAAGGTGCTTCACCTACGAGAACATCATGGATACTTAAAAGTAATCCCATATATCCATATTAAATAATAGTTATTCATTATATGAATATATATGAGATTGATGGAAT

Ace file of the UniGene sp_v2.0_unigene16032 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	GDP dissociation inhibitor protein OsGDI1 [Oryza sativa]	-	-	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	protein	-	-	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	89%

Source	InterPros	Term	Type	Identity
Sma3	Rab GDI protein	IPR000806	-	-
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3		IPR002005	-	-
Sma3	GDP dissociation inhibitor	IPR018203	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWR2

Fln msg: Overlapping hits, possible frame ERROR between 1088 and 1040,

Fln protein: MDEEYDVIVLGTGLKECILSGLLSVDRLKVLHMDRNDYYGGDSTSLNLIQLWKKFRGNDKPPAHLGSSRDYNVDMIPKFMMANGSLVRVLIHTDVTKYLYFKAVDGSYVYNKGKIYKVPATDVEALKSPLMGIFEKRRARKFFIYVQNYDENDPTTHDGMDLTRVTARELIAKYGLDDNTVDFIGHALALHRDDRYLYEPALETxxxxxxxxxxxxxxxxxxPYIYPLYGLGELPQGFARLSAVYGGTYMLNKPECKVEFDEEGKVCGVTSEGETARCKKVVCDPSYLPNKVKKIGKVARAICVMSHPIPNTNDSQSVQIILPQKQLGRKSDMYVFCCSYSHNVAPKGKYIAFVSAEAETDQPEVELQPGIALLGPVDEMFFDTYDRFAPVNEPSLDNCFISTSYDATTHFETTVQDVLAMYTNITGKVLDLSVDLSAASAAEE*

Protein Length: 446

Fln nts: ATGGGGATCCCAACCACTAAACGGAACATTCGGATCCCTCCTTACAAGTCCCAATTTTCTGAGACTACTAGACTTGGAGTTCCTAAGCCCTCCCGACTACTGTGCCGGAATACCGGGATTTAGCATTTTGGTTAAGCATTTGACAATAATTAGACATCTATAAATTCATTTGAGAAAATTTAATTTGCATTCTTTTAAAAGGGGAATATTTAAGGGTAAGGGTCAACCTGGACTCCATTGACACAGTCAGTCACTCTTATTTCGGGCCATTAATGAAAACCTTGCCACTATAATTCCTCCCCGGGCATAGGCCACACCCGCGCCGGTTCATATAAACCCTCCGCTGTAACGCCATTCGCGTGAATACTTTTTTAGATCACAGAACAAATCTTACAATTTTTGTCGATCAATTTCCTTAGAGGGCC_-_ATGGATGAGGAATACGATGTGATAGTGCTGGGCACTGGTCTGAAAGAATGCATCCTCAGCGGTCTCCTTTCTGTGGATCGGCTCAAGGTCCTCCACATGGACAGAAATGATTACTATGGAGGAGATTCTACTTCTCTTAATCTCATCCAGCTTTGGAAGAAGTTCCGAGGTAACGATAAGCCTCCTGCTCATCTCGGATCCAGTAGAGACTACAATGTTGATATGATCCCTAAGTTTATGATGGCAAATGGTAGTTTGGTGCGAGTCCTCATTCACACAGATGTTACAAAATATTTGTATTTTAAGGCTGTGGACGGTAGTTATGTATACAATAAAGGAAAGATATACAAAGTCCCAGCGACTGATGTGGAAGCTCTAAAATCTCCTCTTATGGGAATATTTGAAAAGCGTCGTGCTAGAAAGTTCTTTATTTATGTTCAAAATTATGACGAGAATGATCCAACAACACATGATGGCATGGACTTGACAAGAGTAACAGCAAGAGAACTTATTGCGAAATATGGATTAGATGATAATACTGTAGATTTCATTGGCCATGCATTGGCACTTCATCGGGATGACCGTTATCTATATGAGCCTGCATTAGAGACTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCCATACATATACCCATTGTATGGGTTGGGTGAACTACCTCAGGGATTTGCACGTCTTAGTGCTGTCTATGGAGGAACATACATGCTGAACAAACCGGAGTGCAAGGTTGAGTTTGATGAAGAAGGTAAGGTGTGTGGTGTGACATCTGAAGGGGAGACAGCCAGATGCAAAAAAGTAGTTTGTGATCCATCATATTTACCTAACAAGGTCAAGAAAATTGGAAAGGTTGCTCGTGCAATTTGTGTAATGAGCCACCCTATCCCAAACACAAATGACTCCCAATCAGTACAGATAATTCTGCCTCAGAAGCAACTTGGACGCAAGTCTGACATGTATGTATTTTGCTGTTCTTATTCACATAATGTTGCTCCCAAAGGGAAGTACATTGCTTTTGTTTCGGCTGAGGCAGAAACAGATCAACCAGAGGTAGAATTGCAACCGGGAATAGCTCTTCTTGGACCTGTTGATGAGATGTTCTTTGATACATATGATAGATTTGCTCCTGTTAATGAGCCTTCTCTTGACAATTGCTTCATATCCACTAGCTATGATGCGACAACACATTTTGAGACAACTGTGCAGGATGTTCTTGCCATGTACACCAACATAACTGGAAAGGTTTTGGACCTAAGTGTTGACCTAAGTGCTGCAAGTGCGGCTGAAGAATAA___TGGGCTGTAGCATATCAACCTTTAGTTGGGTTACACATTCCTCTAAGGCTGTACTTGTTTTGATATGATCTACAGTGTGTTGAAGTTTTAGTGTTTGTATGTATTTGGGAATCACGCCTTTACCTGGTGTTTTAATATCTGGAATGTTCAGGTCCAGACATAGAACACTGTTTTTTCAGCTGTTCATTCAAATCACTGGCTTTTATATCATTGATATGTATGAATTTGTCTGCAATAATTGTTCAGTGTTCAGTTTGATAGGAAGACAAGACGTAGAGGTTCTGACTGTGGGTGTTGGTAATCATGTAATATTTTCATCCATGCTTGAAACTCTGCTATGATTTATGGTGCGGGATATTAGTATTTAATCATAAAAATCACTAATATTCAGATGGTAATTTGTATTTGAAGTGAACAAGGTGCTTCACCTACGAGAACATCATGGATACTTAAAAGTAATCCCATATATCCATATTAAATAATAGTTATTCATTATATGAATATATATGAGATTGATGGAAT

Fln Alignment:

Contig16032___MDEEYDVIVLGTGLKECILSGLLSVDRLKVLHMDRNDYYGGDSTSLNLIQLWKKFRGNDKPPAHLGSSRDYNVDMIPKFMMANGSLVRVLIHTDVTKYLYFKAVDGSYVYNKGKIYKVPATDVEALKSPLMGIFEKRRARKFFIYVQNYDENDPTTHDGMDLTRVTARELIAKYGLDDNTVDFIGHALALHRDDRYLYEPALETVxxxxxxxxxxxxxxxxSPYIYPLYGLGELPQGFARLSAVYGGTYMLNKPECKVEFDEEGKVCGVTSEGETARCKKVVCDPSYLPNKVKKIGKVARAICVMSHPIPNTNDSQSVQIILPQKQLGRKSDMYVFCCSYSHNVAPKGKYIAFVSAEAETDQPEVELQPGIALLGPVDEMFFDTYDRFAPVNEPSLDNCFISTSYDATTHFETTVQDVLAMYTNITGK
A9NWR2_______________MDEEYDVIVLGTGLKECILSGLLSVDRLKVLHMDRNDYYGGESTSLNLTQLWKKFRGNDKPPAHLGPSRDYNVDMIPKFMMANGSLVRVLIHTDVTKYLYFKAVDGSYVYNKGKIYKVPATDVEALKSPLMGIFEKRRARKFFIYVQNYDQNDPKTHDGMDLTRVTTRELIAKYGLDDNTVDFIGHALALHRDDRYLFEPALETVxxxxxxxxxxxxxxxxSPYIYPLYGLGELPQGFARLSAVYGGTYMLNKPECKVEFDEEGKVCGVTSEGETARCKKVVCDPSYLTNKVRKVGKVARAICIMSHPIPNTNDSQSVQIILPQKQLGRKSDMYVFCCSYSHNVAPKGKYIAFVSAEADTDQPEVELQPGIALLGPVDEMFFDTYDRFVPVNEPSLDNCFISTSYDATTHFETTVQDVLAMYTHITGK

SNPs (tot: 55)

Position	A %	C %	G %	T %	Probability
729	16	83			0.994512
892		95		4	0.999979
1018	2			77	1.0
1099	2	2		90	0.953776
1100	4			95	0.997218
1168		88	8		0.999262
1169		88	4	8	0.999262
1170		92	8		0.999718
1172		8		92	0.999718
1175	92	8			0.999718
1177	8			92	0.999718
1180			92	8	0.999718
1181		8		92	0.999718
1183		8		92	0.999718
1185		7		92	0.999664
1742	95	3		1	0.904136
1747	93	1	4		0.999955
1749	1	1		91	0.999863
1752		1	5	93	0.999965
1753		5	1	93	0.999965
1754		5		94	0.999994
1755	5	94			0.999994
1756	5			94	0.999996
1758			5	94	0.999995
1759		94		5	0.999995
1762		5		94	0.999995
1764	5			94	0.999995
1765		5	89		0.999765
1926		90		9	1.0
1929	90		9		1.0
1932	9		90		1.0
1935		13		86	1.0
1936		10	3	86	1.0
1938	10	90			1.0
1939	86		10		1.0
1942	7	3	89		0.998606
1945		11	88		1.0
1965		10	90		0.999898
1966		10	90		0.999898
1993	89			3	0.998304
1999	17		82		1.0
2002	81	18			1.0
2003		19	80		1.0
2004	19		80		1.0
2005	19			80	1.0
2006			19	80	1.0
2007			19	80	1.0
2012		20		80	1.0
2013	76		20	4	1.0
2015	4	20		75	1.0
2048		15	84		0.999986
2049		15	84		0.999986
2050	84	15			0.999986
2192	33		66		0.997452
2209	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain