SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene16026

Length: 754 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene16026

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Embryo-abundant protein n=1 Tax=Pinus pinaster RepID=D9IWE0_PINPS	-	-	4.0e-31	66%
FL-Next	tr=Embryo-abundant protein; Pinus pinaster (Maritime pine).	-	-	0.0	66%
Blast2go	embryo-abundant protein	-	-	7.23329e-39	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	defense response to fungus	GO:0050832	Biological Process	7.23329e-39	62%
Blast2go	aspartic-type endopeptidase inhibitor activity	GO:0019828	Molecular Function	7.23329e-39	62%

Source	InterPros	Term	Type	e value	Identity
Sma3	Gnk2-homologous domain	IPR002902	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
29		66		33	0.997452
30	66	33			0.997452
31	66		33		0.997452
33	66		33		0.997452
36		33	66		0.997452
39			33	66	0.997452
45			33	66	0.997452
47		33	66		0.997452
49	66	33			0.997452
50			66	33	0.997452
51		33	66		0.997452
52	33		66		0.997452
157		25	75		0.996473
160		25	75		0.996473
162			75	25	0.996473
163		75	25		0.996473
164	25		75		0.996473
166		25	75		0.996473
170	75		25		0.996473
171	75	25			0.996473
174		75	25		0.996473
175	75			25	0.996473
176	75	25			0.996473
178	75	25			0.996473
180		25		75	0.996473
637	66		33		0.997452

SSRs (tot: 2)

Start position	End position	Sequence	Length
149	161	GTG GTG GTG GTG G	13
720	732	ATAA ATAA ATAA A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain