SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene15992

Length: 1928 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene15992 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	3-deoxy-D-arabino-heptulosonate-7-phosphate synthase 02 n=4 Tax=Vitis vinifera RepID=D0VBC5_VITVI	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	2-dehydro-3-deoxyphosphoheptonate aldolase 3-deoxy-d-arabino-heptulosonate 7-phosphate synthetase	-	-	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	carboxylic acid biosynthetic process	GO:0046394	Biological Process	0.0	89%
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	89%

Source	InterPros	Term	Type	e value	Identity
Sma3	DAHP synthetase, class II	IPR002480	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUF5

Fln msg:

Fln protein: MAMAGLLGSSLLPTTTPLKLSVLSNGRTSNGSQATMIRAVHAAEPLKTGKSVVQTPPLKALTGNSWSVDSWKNKKALQLPEYPNKEELESVLQTMETFPPIVFAGEARHLEERIAEAAMGKAFLLQGGDCAESFKEFNAVNIRDTFRILLQMGVVMMFGGQMPVIKVGRMAGQFAKPRSDAFEEKDGVKLPSYRGDNINGDAFDEQSRKPDPQRMIRAYCQAAATLNLLRAFATGGYAAMQRVTQWNLNFTEHSEQGDRYRELAHRVDEALGFMGAAGLTVDHPIMTSTEFWTSHECLLLPYEQVLTRQDSTSGLYYDCSAHMLWVGERTRQLDGAHVEFLRGVANPIGIKVSDKMEPRELVRLCEVLNPQNKAGRLTVIVRMGAENMRVKLPHLIRAVRNAGLIVTWVSDPMHGNTIKAPCGLKTRPFDAIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECVGGSGGVTLDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRLTSKAIPNFTNQYKLTSSLH*

Protein Length: 531

Fln nts: GAGCTAGTTTTGTGGGAATTGGCACCTTCGGTTTGTTGGAGGGCCGATTTATCGTTGCTCACAAAAT_-_ATGGCCATGGCAGGTTTATTGGGCTCTTCGTTGCTTCCCACAACAACACCTTTGAAGCTCTCTGTGCTCAGCAATGGCAGGACGAGCAACGGTTCACAGGCAACGATGATCCGTGCGGTTCATGCCGCGGAGCCGCTGAAAACCGGGAAGTCTGTGGTTCAAACCCCGCCCCTGAAAGCGCTCACTGGTAATTCCTGGAGCGTGGATAGCTGGAAGAACAAAAAGGCTCTGCAGCTCCCCGAGTATCCCAACAAGGAAGAGCTGGAGTCCGTGCTCCAGACAATGGAGACGTTCCCGCCCATTGTGTTTGCTGGTGAGGCCAGACACTTGGAAGAGAGAATTGCAGAAGCTGCGATGGGCAAAGCTTTTCTTCTTCAGGGGGGTGATTGTGCCGAGAGCTTCAAGGAATTCAATGCTGTTAATATCAGGGATACCTTCAGAATTCTGCTGCAGATGGGCGTTGTCATGATGTTTGGTGGGCAGATGCCTGTCATTAAGGTGGGCAGAATGGCAGGGCAGTTTGCTAAGCCCCGATCTGACGCTTTTGAGGAGAAGGATGGAGTGAAGCTGCCAAGCTACCGCGGTGATAATATCAACGGTGATGCCTTCGACGAACAGTCCCGAAAACCCGACCCCCAGCGGATGATCAGAGCCTACTGCCAAGCCGCAGCCACTCTCAATCTCCTCAGAGCCTTCGCCACTGGAGGCTACGCCGCTATGCAGAGAGTTACGCAGTGGAATCTCAATTTCACCGAGCACAGCGAACAAGGCGACAGGTATCGTGAGCTGGCGCACCGCGTGGACGAGGCCCTTGGTTTCATGGGGGCTGCGGGGCTAACGGTCGATCACCCCATTATGACCTCCACGGAGTTCTGGACATCACACGAATGCCTGCTGCTCCCGTACGAGCAGGTGCTGACGAGGCAGGACTCCACGTCAGGGCTCTACTATGACTGCTCCGCACACATGCTGTGGGTTGGGGAGCGGACACGTCAGCTGGATGGTGCCCACGTGGAATTCCTCCGCGGCGTCGCAAATCCAATCGGTATCAAGGTGAGTGACAAGATGGAGCCGAGGGAGCTGGTAAGGCTGTGCGAGGTGCTGAACCCCCAAAATAAGGCGGGCAGGCTGACCGTGATCGTTCGCATGGGCGCGGAAAACATGCGGGTGAAGTTACCGCATCTGATCAGGGCGGTGCGGAATGCGGGATTGATTGTTACGTGGGTTAGCGATCCAATGCACGGCAACACCATCAAGGCTCCTTGCGGTCTCAAGACTCGACCTTTTGACGCAATTCGGGCAGAAGTGCGAGCATTTTTTGATGTTCATGAGCAAGAAGGAAGCCATCCTGGAGGAGTGCATCTAGAGATGACTGGGCAGAATGTGACAGAGTGTGTAGGAGGGTCAGGGGGTGTCACCCTTGATGACTTAAGCTCTCGTTACCACACACATTGTGACCCTCGACTGAATGCTTCTCAATCTTTGGAGTTGGCCTTCATCATTGCAGAGAGGTTGAGGAAGAGGAGGCTCACATCTAAAGCAATTCCAAACTTTACCAACCAATATAAACTCACTTCCTCCCTCCATTAA___AATAAACAATCAAACAAATACCTATCTAGTTTACATTTACAATCTAAGAGATTGGCAAGCAAATACATACTGCATGAAATTTGTATCTTTTTATACACCCATAGATTCCTTATTAGTGGTCATTTGAAAATCAACTCTCAGAAATGGGATGTAAGGTAAGCAATATCCATGTAAAGGTTTCTAATGCATGTTGAGAATAATCCTGTATGGATAATCATTGTGAAATAAAGATGATTTAAATATATTTTATAATAATTTTTATTGAGTTGAG

Fln Alignment:

Contig15992___SQATMIRAVHAAEPLKTGKSVVQTPPLKALTGNSWSVDSWKNKKALQLPEYPNKEELESVLQTMETFPPIVFAGEARHLEERIAEAAMGKAFLLQGGDCAESFKEFNAVNIRDTFRILLXXXXXXXXXXXMPVIKVGRMAGQFAKPRSDAFEEKDGVKLPSYRGDNINGDAFDEQSRKPDPQRMIRAYCQAAATLNLLRAFATGGYAAMQRVTQWNLNFTEHSEQGDRYRELAHRVDEALGFMGAAGLTVDHPIMTSTEFWTSHECLLLPYEQVLTRQDSTSGLYYDCSAHMLWVGERTRQLDGAHVEFLRGVANPIGIKVSDKMEPRELVRLCEVLNPQNKAGRLTVIVRMGAENMRVKLPHLIRAVRNAGLIVTWVSDPMHGNTIKAPCGLKTRPFDAIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECVGGSGGVTLDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRLTS
A9NUF5_______________SDAMVVRAVRT-EPAKISESASKT--------GGWSIESWKSKKALQLPDYPNKEELDTVITTLEAFPPLVFAGEARHLQERLAEAALGKAFLLQGGDCAESFKEFNANNIRDTFRILLQMGAVLMFGGQMPVVKVGRMAGQFAKPRSESFEEVNGVKLPSYRGDNINGDTFDEKSRIPDPERMIRAYCQSAATLNLLRAFATGGYAAMQRVNQWNLDFTEHSEQGDRYRELAHRVDEALGFMSAAGLTVDHPIMTTTEFYTSHECLLLPYEEALTRQDSTSGKFYDCSAHMLWIGERTRQLDGSHVEFLRGVANPIGVKVSDKMDPGELVKLVEILNPENKPGRLTVVVRMGAEKLRVKLPHLIRAVRNAGLIVTWVSDPMHGNTIKAPCGLKTRPFDAIRAEVRAFFDVHDQEGSHPGGVHLEMTGQNVTECIGGSRTVTLDDLSDRYHTHCDPRLNASQALELAFIIAERLRKRRLGS

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
404	80		20		0.995493
593	88		11		0.923564
890		12	87		0.992554
894	87	12			0.992554
895		12		87	0.992554
896	12		87		0.992554
900	12		87		0.992554
919		14	85		0.993533
922	14	85			0.993533
923	14			85	0.993533
924			85	14	0.993533
971	20		80		0.995493
1000	80		20		0.995493
1033		50		50	1.0
1037		75		25	0.996473
1043	66		33		0.997452
1092		66		33	0.997452
1093		66	33		0.997452
1094	33			66	0.997452
1095		33		66	0.997452
1096		33	66		0.997452
1099		66	33		0.997452
1105		33	66		0.997452
1550	82		17		1.0
1607		90	10		0.90298
1655	50		50		1.0
1668		20	80		0.995493
1875		11		88	0.999952
1911	10			90	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain