SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene15990

Length: 1631 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene15990 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ssDNA-binding transcriptional regulator [Arabidopsis thaliana] gb\|AAF43941.1\|AC012188_18 Contains similarity to a hypothetical protein from Arabidopsis thaliana gb\|AC002521.2. EST gb\|AI995686 comes from this gene gb\|AAG48815.1\|AF332452_1 putative DNA-bind	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Blast2go	ssdna-binding transcriptional regulator	-	-	68%

Source	GOs	Term	Type	Identity
Blast2go	negative regulation of telomere maintenance via telomerase	GO:0032211	Biological Process	68%
Blast2go	telomeric DNA binding	GO:0042162	Molecular Function	68%
Blast2go	plastid chromosome	GO:0009508	Cellular Component	68%
Blast2go	chloroplast	GO:0009507	Cellular Component	68%
Blast2go	nucleus	GO:0005634	Cellular Component	68%

Source	InterPros	Term	Type	e value	Identity
Sma3	Plant transcription factor	IPR013742	-	0.0	-
Sma3	ssDNA-binding transcriptional regulator	IPR009044	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NLD1

Fln msg:

Fln protein: MLKLKGLGNQILRTAAARRLQPLCTPFSSSHWYSKVVKVGSNDELSETPSSSSSLGHYAPSQPDFLRRQTNKIYVRHTVFKDEGALGMQPKLPDYITLNTGGVILAKEGCMFLEFTPAVGPRQYDWSKKKVIALSVVEVGQLSSLGSDESCEFKHDSFLGKSEAGKVWKVLKVGNLQDAEGYTFEFSVTDNIANADLSLSIPITKGEFSVMRSSFNFILPYLMGWHAYTDSTKFNESGYFMSGSPIIAKRPDLEWGR*

Protein Length: 259

Fln nts: ATGGGGGACCAAATTCAAGTATTTAATATATTTTAGGGTTAAGGACATGCTCCAATTAATGGGCTTTTTTGAAAATCTGGGTGGCCAGCATCAACGTGCCCGGTGATGTCATTTCATTTTATTTTGTTTCACATCGGGTAAGTACACTAATAAGTATCATCTCACACCTTTGATTTGGCGCCCAAGCACAGTTAAAAACCTCACGCGCTGTGACCATCTCCGACAGAAGAAGAAGAAA_-_ATGCTGAAGCTCAAAGGTTTGGGTAATCAAATTCTGCGCACCGCTGCTGCCAGGCGCTTACAACCTCTTTGCACGCCCTTCAGTTCCAGCCACTGGTATTCCAAGGTTGTGAAAGTTGGTTCTAATGATGAATTGTCTGAGACCCCAAGCTCATCTTCGAGTCTGGGCCATTATGCTCCAAGTCAGCCCGATTTTTTGCGACGTCAAACCAACAAGATATATGTAAGGCATACAGTCTTCAAAGATGAAGGGGCACTTGGGATGCAACCCAAATTACCTGATTATATCACATTGAATACGGGAGGAGTCATACTAGCAAAGGAAGGTTGCATGTTCCTTGAGTTTACTCCTGCTGTTGGTCCTCGCCAGTATGATTGGAGTAAGAAGAAGGTAATTGCTTTATCTGTTGTTGAAGTTGGACAACTGTCAAGTTTAGGTTCCGATGAGTCATGTGAATTCAAACATGATTCGTTTCTGGGAAAAAGTGAAGCAGGAAAAGTATGGAAAGTTTTGAAGGTTGGTAATTTGCAAGACGCGGAAGGATACACTTTCGAATTTAGTGTTACTGACAACATTGCAAATGCAGATTTGAGTTTGTCTATTCCTATAACAAAAGGGGAATTTTCAGTCATGCGGTCTAGTTTCAATTTTATCTTGCCTTATCTCATGGGCTGGCATGCCTATACAGACTCCACAAAGTTCAATGAATCTGGCTATTTCATGTCTGGTAGCCCTATTATTGCCAAAAGACCTGATTTAGAGTGGGGTAGGTAA___TTTGGTTTTGAAGAAAAGATATGCAGACCTCAGGCGAAAGATTTTTAACTGTTTGGGATGCTTACCTGAATGTGCCATTTTAATAGCTATGACAAGTAATGTTCACTGGAGGGAAAAGGTGTTGATTTTGGAAGCAATTGATTTGCGAGATATATAATTTGGTGCAGAGAGATTCTCACTGAGGGTGACTCTAGAACTATATTCAAAGTTATAATGTTTCGTATCATATATGGCAAATGGATTAAATGCTTAGATTAGTAGTGTTAGAGGCATACTGAACATTGGTGTTACACCTTCAGTTTTATTTGGAACTACAGTAAAATGCCAGTTTCATGGAGATTTTGTTGATGGGAGATTTGATTTCAGTACCAAGGACAGCACGCATCAAGGTTTTTTCCCTCTTAATTTTGTAAACATTTTTGTTAGATATTTGGTGTTCTATATCGATGACGTCTTAAAAGAATGTTGTCTGGGTTTGGTCACAAATATGTTTGGTGGTCTATATTGGTGTAGTCTTAAAAGAGCATTGACTTGTATCATTTCTCTTATTTTGCTATCATTTGAATTTGAATTATTACTACTTTATAGAAATTTTCTGCTCGTTTAATTGCTGAAATAC

Fln Alignment:

Contig15990___QILRTAAARRLQPLCTPFSSSHWYSKVVKVGSNDELSETPXXXXSLGHYAPSQPDFLRRQTNKIYVRHTVFKDEGALGMQPKLPDYITLNTGGVILAKEGCMFLEFTPAVGPRQYDWSKKKVIALSVVEVGQLSSLGSDESCEFKHDSFLGKSEAGKVWKVLKVGNLQDAEGYTFEFSVTDNIANADLSLSIPITKGEFSVMRSSFNFILPYLMGWHAYTDSTKFNESGYFMSGSPIIAKRPDLEWGR
A9NLD1_______________RILGGSATRRFQPLCMPFSSSHWYSKVAKASSNDELSEVRGLSSSLDHYALTQPEFLRRQTNKIYVKHTVYKGEGALTMKPKLPDYITLNMGGVTVAKEGCMFLEFAPAVGPRQYDWSKKKIIALSVVEVGTLLSLGPDESCEFTHDPFMGKSEAGKIMKVLKVGNLQDTGGYFFNLSVTDRIADVDESFSIPITKGEFSVMQSIFNFILPYLMGWHAYMDSTKLNESGHFKSGGPSIAKRPDLEWGR

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
771	75		25		0.996473
889			20	80	0.995493
925	60			40	1.0
1000	33			66	1.0
1013	66	33			1.0
1083	89		10		0.999919
1206	11		88		1.0
1210	5		91	2	0.99441
1211	91		8		1.0
1213		8		80	1.0
1214	16			83	1.0
1215	5		91	2	0.99441
1216		10	89		1.0
1217	92		7		1.0
1218	10		84	5	1.0
1219	15	74	10		1.0
1220	89		10		1.0
1221		5		94	0.997984
1222	84	10	5		1.0
1224		15		84	1.0
1226	11		88		1.0
1228		88	11		1.0
1278	86		13		1.0
1409		10		89	0.999919
1411		10	89		0.999919
1412		10	89		0.999919
1414			89	10	0.999919
1430		11	88		0.999952
1431	88	11			0.999952
1432		11	88		0.999952
1465		25	75		0.996473
1466		25		75	0.996473
1467		25	75		0.996473
1468		25		75	0.996473
1469	25		75		0.996473
1470	75			25	0.996473
1493	66	33			0.997452
1494		33		66	0.997452
1495		33		66	0.997452
1496		33		66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
1395	1407	TTC TTC TTC TTC T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain