SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene15975

Length: 1925 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene15975 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pectate lyase n=1 Tax=Dianthus caryophyllus RepID=D4QD73_DIACA	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Blast2go	pectate lyase	-	-	86%

Source	InterPros	Term	Type	Identity
Sma3	Pectate lyase/Amb allergen	IPR002022	-	-
Sma3	AmbAllergen	IPR018082	-	-
Sma3	Parallel beta-helix repeat	IPR006626	-	-
Sma3	Pectin lyase fold	IPR012334	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWK6

Fln msg:

Fln protein: MTGYRCVFSLLSFLGMFCARSSAGKSFENFTAAIHGQAAVVSGSKDTQQSATKYVEQPGRVVEAVERSINNSRRELSYLTCGTGNPIDDCWRCNPDWENNRKRLADCAIGFGGNATGGRNGRIYVVTDSNDYDAVNPRPGTLRHAVIQTEPLWIIFQRDMVIQLKEELFMNSYKTIDGRGANVHIANGACITVQYVHHIIIHGIHIHDCKPAGNAMVRDSPGHYGWRTRSDGDGVSIVGGSNIWIDHCSLSNCADGLIDAVLGSTAITISNNFMTHHDKVMLLGHSDEYMQDVNMQVTVAFNRFGEGLVQRIPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFHAPVNPFSKEVTKHEDALESVWRQWNWRSNGDLMLNGAFFTQSGAAASSSYAKASSLAAKPSSLVGSLTGNSGVLVCRKGSRC*

Protein Length: 435

Fln nts: GGGAAAGGTGTTTGTGGAGATTCGTGCACACCAGCCGAGTTTTAGCACAAGTTTCGTGGTCATGTTATGTGTGCTCGACTGACATTAGTTGTAATTTATAGGAATTAGCCTAGCAGCTTGTTATCTATGATTTACCATATTCTCGTAAATCAATGTCATAAGCTCAACAGAGTCTTCTCTTGCCCATTGTGTTGTTAGCAGAATCGATTCAGCAGAGAATATCTAGCATAGCAGCCAAGTATTATATATAGGAGTGTAGTGGAATCCCATCGTTGTAGTCTGCAGACTGTAATATTGTTGGCCCTCTTCTGTAACCAAA_-_ATGACTGGCTATCGATGTGTGTTCTCATTGCTTAGTTTCTTGGGAATGTTTTGCGCTCGTTCTTCAGCAGGCAAGTCATTCGAGAATTTTACAGCGGCTATCCATGGTCAGGCTGCGGTCGTATCTGGTTCTAAAGATACTCAACAATCTGCAACGAAATATGTGGAGCAGCCCGGACGGGTAGTTGAAGCTGTTGAAAGGAGTATTAACAATTCGAGGAGGGAGCTAAGTTATTTGACTTGCGGAACGGGGAATCCCATCGACGATTGCTGGCGCTGCAATCCAGACTGGGAAAACAATCGAAAGAGGCTTGCAGACTGCGCCATTGGGTTTGGCGGGAATGCCACTGGAGGGAGGAATGGGAGGATTTATGTTGTCACAGATTCCAATGACTACGATGCAGTCAATCCACGGCCGGGTACGCTGCGCCATGCTGTGATTCAAACTGAGCCTCTGTGGATAATTTTTCAGAGAGACATGGTCATCCAGCTCAAAGAAGAGCTTTTCATGAACAGTTACAAGACAATAGACGGAAGAGGTGCAAATGTCCACATTGCCAACGGTGCCTGCATTACGGTACAGTACGTCCACCACATTATCATTCACGGGATTCACATCCATGACTGCAAGCCTGCAGGAAATGCCATGGTAAGGGATTCCCCGGGACATTACGGGTGGAGAACGAGAAGTGATGGAGATGGAGTCTCCATCGTTGGGGGAAGCAATATCTGGATAGACCATTGCTCCTTGTCAAATTGTGCAGATGGACTCATAGATGCCGTCCTGGGGTCGACTGCAATAACAATTTCAAACAATTTTATGACACACCATGATAAGGTCATGCTCCTCGGTCACAGTGACGAGTATATGCAGGATGTTAACATGCAAGTAACAGTTGCTTTCAACCGTTTCGGGGAAGGGCTTGTGCAACGCATACCTAGATGCCGACATGGCTACTTCCACGTGGTGAACAACGATTACACACACTGGGAAATGTACGCAATTGGTGGAAGTGCAAACCCAACAATCAACAGCCAAGGCAATCGATTCCACGCACCGGTCAATCCCTTCTCCAAGGAGGTGACGAAACACGAGGACGCACTGGAAAGTGTATGGAGACAATGGAATTGGAGGTCAAACGGAGACCTAATGTTGAATGGGGCGTTTTTTACTCAGTCTGGCGCGGCCGCATCATCAAGCTATGCGAAGGCTTCGAGTCTCGCAGCGAAGCCATCGTCTCTTGTAGGGTCCCTCACAGGGAACTCTGGTGTTCTGGTATGCCGAAAAGGCTCCCGCTGTTAA___TCCCAACAACAGTTGGACGCACACACCCACTCTCAATGTCCCTGTCTGTCCCAATTAGCTTTTCGGTAGCAACTTCTCTTTCGGTATAGTATATATAGTGAGCACTCTTTCATGTGAGAGCATGTTAAATAACTTGACGAAGCTCTTCCACTTTTCAAACTTGGACCTCCACGAATATACCGCTCTCCTCCTTTATGTATGCAGTTAGTGTGCAAGCGTAGATGTGTTCCAGAATGTCGATTGCATAAATACTGTGTATGTACAGTCATTTATATAAGTTATCGATTCTATTTCTGTGTTCATT

Fln Alignment:

Contig15975___MTGYRCVFSLLSFLGMFCARSSAGKSF---ENFTAAIHGQAAVVSGSKDTQQSATKYVEQPGRVVEAVERSINNSRRELSYLTCGTGNPIDDCWRCNPDWENNRKRLADCXXXXXXXXXXXXXXXIYVVTDSNDYDAVNPRPGTLRHAVIQTEPLWIIFQRDMVIQLKEELFMNSYKTIDGRGANVHIANGACITVQYVXXXXXXXXXXHDCKPAGNAMVRDSPGHYGWRTRXXXXXXXXXXXSNIWIDHCSLSNCADGLIDAVLGSTAITISNNFMTHHDKVMLLGHSDEYMQDVNMQVTVAFNRFGEGLVQRIPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFHAPVNPFSKEVTKHEDALESVWRQWNWRSNGDLMLNGAFFTQSGXXXXXXXXXXXXXXXXXXXLVGSLTGNSGVLVCRKGSRC
A9NWK6_______________MSGYRTVLALLVLLWIFCIPSEASKTFGILEKLTGAALGRPAVVPETKHAQEPATKHVEDPERVVEMVERSINSSRRELSYLSCGTGNPIDDCWRCDSDWENNRKRLADCAIGFGRNAIGGQNGRIYVVTDPNDYNAVNPRPGTLRHAVIQTEPLWIIFQRDMVIQLKEELIMNSYKTIDGRGANVHIANGPCITVQYVHHIIIHGIHIHDCKPAGNAMVRDSPGHYGWRTVSDGDGVSIFGGSNIWVDHCSLSNCADGLVDAIRGSTAITVSNNYMSHHNKVMLLGHSDDYTQDVNMQVTIAYNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPTNPFSKEVTKHEDAPESKWRQWNWRSDGDQMLNGAFFTPSGAGASSSYSKASSLAARPSSLVPSLTTNAGVLTCRSGSRC

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
131		14		85	0.993533
148			25	75	1.0
156	25		75		1.0
284	11			88	1.0
537	98		2		0.900134
590		13		86	1.0
595		2		97	0.930363
602	97		2		0.936149
668	94		5		0.999993
680	1	94	3		0.951749
694	2	86			1.0
696	95			4	0.997218
697	95	4			0.997218
699	2	92		4	0.987114
707	92		4	2	0.98868
713		5		94	0.9982
749	93		6		0.999453
782		10		90	0.999898
827			76	23	1.0
833		5	41	52	1.0
851	75		25		1.0
860	25		75		1.0
869	26		73		1.0
874		26		73	1.0
895	27	72			1.0
956		22		77	0.999999
962			80	20	0.999996
1062			10	90	0.90298
1159		33		66	1.0
1691	16		83		0.994512
1834	33			66	0.997452
1838		88		11	0.923564
1840	88			11	0.923564
1856	88	11			0.923564
1858	88	11			0.923564
1859		11		88	0.923564
1861	88			11	0.923564
1901	85	14			0.993533
1903		33	66		0.997452
1905	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain