SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene15959

Length: 2613 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene15959
TACATGGGGAGGAGAAGAGGAAGAAGTTAGATCAAATTGCAGAGAAAGGATATCTTTGGGATATAGCGTGAATGCTAAGGCCTATACCGTCGTGTACCTTGGCTGATGGGGAGGGGAAGGAGGCCACTTGCAAAAGAATTTGTGTGAGCGTAATTTGGAGAAGAGAAAATTTCAGAAGAATTGGATTATGGCACAGTTTCAAGATGAGAGGACATCGGAACCTCTGAAACTCCAGCAAGGTGAACGTGAGGAGTCGCAGCAGCAGCAGGATGCATGGCCAAAGCCATCGACGCCTGTGTCGCGAACAAAGGAAACACAGGTAGCCGATGAGGAAGAAAATGCCGTTTCTCAGTCCCCTAAGAAATCGATGCTGCGGAGGGTGAAAGACAGAGCCAAGACATATATCCATAAGCACGGTTATGGCCACAGTAAAGAGCAAGGAGAAGAGGAAGACCACGATCAGCTTGAAGAAGAGGGCCACGATCACTTTAAAGAAGACCAAAAGAAAATACGGAAGGGGAGAAGAAGAAAAGCAGAGGATTTGAATTCTAATTTCAGTAGCAGATCTTCAGATGCAGGTTCGGCCGTGTCTCCGGCGTTAGATGCATCTTCAGCACCTGTAGAGACGAGAGGACAGCAAGAAGTGCCTACGACTCCAGCTGTAGTTAATAGGCGAAATGAAGCTCTAGAAAATGAATATTATGGCAAAGATAAGGCAGAGAAGAGCGACTACAGCGATGCCTTCCCTAGAGCTCCTAAGGATCCGGAGGGAATGATGAAGTCCATAAATGAAGAATCGGCGGTGGAAACAGTACAAAATCAAGAAGCTGCCAAAGATCGTTGGTACGATGCCGATGACACCGTCGCTGGAGCGCCTACTGTGAAAGATCAAAATCCGAGCCTGAGCCATCCAGGTTCAGAGAAATGTGGAACAACGGAGCCGATATTCGACGAGCTTGAAGATGCAGATCAGGATAAGCTTGGCGACAAAGAGAATAAAGTTCCTGCAGGTCTTTCAGATGAATCGCAGGCTTCAAAAGCCCTGCAAGAGGCTAGCAGCGAAGAGTTTAATGAAAATGCTGGTCGATCAACAGCTTTGGAGGATACCACTTATATTGAGGGATCGAAGGATACAACTGCAATGAATTTGGGAGTTACAGGCCTGGATGCCAGTGAAAAGGATAAAGAAACGAAGGATGAAGAATGGGACGGGGATGACGAAAGTTACAAGGAGAAGATTCATGATAAGACATCAACAGAATATGGCACCAATGTTGCATCAAAACGTGGAAATGACGAACAACAATCTATCCACGAGCCGCCCTATGAGCCAGATAGAATGGCAGAGAAAGAAAATTATGAGAATAGCGAAGAAGGTAAAAGTTATGGAGACCAGATCTATAACAAAGATCCCACAGAAAAGATTGAACCTTCATCCAAATTCGGACATGGCGAACATCAAGAACCTGGGCAGGAGGATATCGAAGAAGGTAAAAGTTATGGAGACCAGATCTATAACAAAGATCCCACAGAAAAGATTGAACCTTCATCCAAATTCGGACATGGCGAACATCGAGAACCTGGGCAGGAGGAGACAGAGAAGAGAACAGAGCCAGATAGAATGGCAGAGGAAGAAAATTATGAGAAAAGCGAAAAAGGTAAAAGTTATGGAGACCAGATTTATGACATAGATCCCACAGAAAAGACTGAACTTCCATCCAAATTCGGACATGGCGAACATCAAGAACCTGGGCAAGAGGAGACCGAGAGGAGAACAGAGAGGGTTAGTACAGATGATGTAGAAGAGGCGAATGAAGAAACTGGCAAAAGTTCGACAGGCACACCTTCTGCAGCCGAGAGCATAGTTTCGTCCAATCCTGCGGTGGAAGAGAAAGTTGAAGGGCAAGCAATGGGAATCGATGAAGATGATGTTTATAAGAAAACAAAATCAGATGGCAAGAGTTTGACAGAGACACCTTCTGTAGACAAGGGTGGAGTTTCATCCAATCCTGTTGTAGAAGAGAAAGCTGATGGGCAAACGGGCGAAACGTATGAAGATGATGTTGAGGAGAAAACAAAATCTGATGGGCATGATACTGTTGCAGGAAAAAGTTACTCGGAGCAGGTGTATTCCACAGCCAGCACTGCAAAAGGTGCCCTTTACTCAGTGTTTGGATATGGAGGAGCAAAAGCTGTGCCGGATAAGCAGATTCAACCAACTGAGAGTAAGGAATGAGTGAATCTAATGCTCAGATTCTACAGGGGACTACACTTCTGATAATATTAATTTGATCGAATGAATTTTAATTTCTTGTTTCTTCCTGGGTCAATGTGGATTGGAGCGTTTTCTGTTGAAGCACACCATTCAAATAAGCAGTCCGATGCCGCCTATCATCTGAGAATCATAGAAGATCATGCAAATATTCTGGATTGTCGTGATATTTTAATATTTTGTAGAAGACCATGCAAGTGTTGTGGATTACTGTCGTGATAATATTTGTAAACTCAAAATGTGTGTAATGATACGATATATTTATCTCTATTGTAAGTGACATATTTGTTGTAATATTGATTATTTTTTACAATAAACATTAAATAAATATTTATTATACT

Ace file of the UniGene sp_v2.0_unigene15959 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Caldesmon multi-domain protein	-	-	9.0e-07	22%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%
Blast2go	mucin-like protein	-	-	1.71714e-31	40%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8N7

Fln msg: your sequence is longer than subject: 683 - 96

Fln protein: MAQFQDERTSEPLKLQQGEREESQQQQDAWPKPSTPVSRTKETQVADEEENAVSQSPKKSMLRRVKDRAKTYIHKHGYGHSKEQGEEEDHDQLEEEGHDHFKEDQKKIRKGRRRKAEDLNSNFSSRSSDAGSAVSPALDASSAPVETRGQQEVPTTPAVVNRRNEALENEYYGKDKAEKSDYSDAFPRAPKDPEGMMKSINEESAVETVQNQEAAKDRWYDADDTVAGAPTVKDQNPSLSHPGSEKCGTTEPIFDELEDADQDKLGDKENKVPAGLSDESQASKALQEASSEEFNENAGRSTALEDTTYIEGSKDTTAMNLGVTGLDASEKDKETKDEEWDGDDESYKEKIHDKTSTEYGTNVASKRGNDEQQSIHEPPYEPDRMAEKENYENSEEGKSYGDQIYNKDPTEKIEPSSKFGHGEHQEPGQEDIEEGKSYGDQIYNKDPTEKIEPSSKFGHGEHREPGQEETEKRTEPDRMAEEENYEKSEKGKSYGDQIYDIDPTEKTELPSKFGHGEHQEPGQEETERRTERVSTDDVEEANEETGKSSTGTPSAAESIVSSNPAVEEKVEGQAMGIDEDDVYKKTKSDGKSLTETPSVDKGGVSSNPVVEEKADGQTGETYEDDVEEKTKSDGHDTVAGKSYSEQVYSTASTAKGALYSVFGYGGAKAVPDKQIQPTESKE*

Protein Length: 684

Fln nts: TACATGGGGAGGAGAAGAGGAAGAAGTTAGATCAAATTGCAGAGAAAGGATATCTTTGGGATATAGCGTGAATGCTAAGGCCTATACCGTCGTGTACCTTGGCTGATGGGGAGGGGAAGGAGGCCACTTGCAAAAGAATTTGTGTGAGCGTAATTTGGAGAAGAGAAAATTTCAGAAGAATTGGATT_-_ATGGCACAGTTTCAAGATGAGAGGACATCGGAACCTCTGAAACTCCAGCAAGGTGAACGTGAGGAGTCGCAGCAGCAGCAGGATGCATGGCCAAAGCCATCGACGCCTGTGTCGCGAACAAAGGAAACACAGGTAGCCGATGAGGAAGAAAATGCCGTTTCTCAGTCCCCTAAGAAATCGATGCTGCGGAGGGTGAAAGACAGAGCCAAGACATATATCCATAAGCACGGTTATGGCCACAGTAAAGAGCAAGGAGAAGAGGAAGACCACGATCAGCTTGAAGAAGAGGGCCACGATCACTTTAAAGAAGACCAAAAGAAAATACGGAAGGGGAGAAGAAGAAAAGCAGAGGATTTGAATTCTAATTTCAGTAGCAGATCTTCAGATGCAGGTTCGGCCGTGTCTCCGGCGTTAGATGCATCTTCAGCACCTGTAGAGACGAGAGGACAGCAAGAAGTGCCTACGACTCCAGCTGTAGTTAATAGGCGAAATGAAGCTCTAGAAAATGAATATTATGGCAAAGATAAGGCAGAGAAGAGCGACTACAGCGATGCCTTCCCTAGAGCTCCTAAGGATCCGGAGGGAATGATGAAGTCCATAAATGAAGAATCGGCGGTGGAAACAGTACAAAATCAAGAAGCTGCCAAAGATCGTTGGTACGATGCCGATGACACCGTCGCTGGAGCGCCTACTGTGAAAGATCAAAATCCGAGCCTGAGCCATCCAGGTTCAGAGAAATGTGGAACAACGGAGCCGATATTCGACGAGCTTGAAGATGCAGATCAGGATAAGCTTGGCGACAAAGAGAATAAAGTTCCTGCAGGTCTTTCAGATGAATCGCAGGCTTCAAAAGCCCTGCAAGAGGCTAGCAGCGAAGAGTTTAATGAAAATGCTGGTCGATCAACAGCTTTGGAGGATACCACTTATATTGAGGGATCGAAGGATACAACTGCAATGAATTTGGGAGTTACAGGCCTGGATGCCAGTGAAAAGGATAAAGAAACGAAGGATGAAGAATGGGACGGGGATGACGAAAGTTACAAGGAGAAGATTCATGATAAGACATCAACAGAATATGGCACCAATGTTGCATCAAAACGTGGAAATGACGAACAACAATCTATCCACGAGCCGCCCTATGAGCCAGATAGAATGGCAGAGAAAGAAAATTATGAGAATAGCGAAGAAGGTAAAAGTTATGGAGACCAGATCTATAACAAAGATCCCACAGAAAAGATTGAACCTTCATCCAAATTCGGACATGGCGAACATCAAGAACCTGGGCAGGAGGATATCGAAGAAGGTAAAAGTTATGGAGACCAGATCTATAACAAAGATCCCACAGAAAAGATTGAACCTTCATCCAAATTCGGACATGGCGAACATCGAGAACCTGGGCAGGAGGAGACAGAGAAGAGAACAGAGCCAGATAGAATGGCAGAGGAAGAAAATTATGAGAAAAGCGAAAAAGGTAAAAGTTATGGAGACCAGATTTATGACATAGATCCCACAGAAAAGACTGAACTTCCATCCAAATTCGGACATGGCGAACATCAAGAACCTGGGCAAGAGGAGACCGAGAGGAGAACAGAGAGGGTTAGTACAGATGATGTAGAAGAGGCGAATGAAGAAACTGGCAAAAGTTCGACAGGCACACCTTCTGCAGCCGAGAGCATAGTTTCGTCCAATCCTGCGGTGGAAGAGAAAGTTGAAGGGCAAGCAATGGGAATCGATGAAGATGATGTTTATAAGAAAACAAAATCAGATGGCAAGAGTTTGACAGAGACACCTTCTGTAGACAAGGGTGGAGTTTCATCCAATCCTGTTGTAGAAGAGAAAGCTGATGGGCAAACGGGCGAAACGTATGAAGATGATGTTGAGGAGAAAACAAAATCTGATGGGCATGATACTGTTGCAGGAAAAAGTTACTCGGAGCAGGTGTATTCCACAGCCAGCACTGCAAAAGGTGCCCTTTACTCAGTGTTTGGATATGGAGGAGCAAAAGCTGTGCCGGATAAGCAGATTCAACCAACTGAGAGTAAGGAATGA___GTGAATCTAATGCTCAGATTCTACAGGGGACTACACTTCTGATAATATTAATTTGATCGAATGAATTTTAATTTCTTGTTTCTTCCTGGGTCAATGTGGATTGGAGCGTTTTCTGTTGAAGCACACCATTCAAATAAGCAGTCCGATGCCGCCTATCATCTGAGAATCATAGAAGATCATGCAAATATTCTGGATTGTCGTGATATTTTAATATTTTGTAGAAGACCATGCAAGTGTTGTGGATTACTGTCGTGATAATATTTGTAAACTCAAAATGTGTGTAATGATACGATATATTTATCTCTATTGTAAGTGACATATTTGTTGTAATATTGATTATTTTTTACAATAAACATTAAATAAATATTTATTATACT

Fln Alignment:

Contig15959___MGIDEDDVYKKTKSDGKSLTETPSVDKGGVSSNPVVEEKADGQTGETYEDDVEEKTKSDGHDTVAGKSYSEQVYSTASTAKGALYSVFGYGGAKAVPDKQIQPTE
D5A8N7_______________MEMYEDDVDEKAKSDGKSLTDTPSAAESVVSSNPVVEAKAEGQT------------KSDGDDTVAGKSYTDKMYSTAGTAKNAFYSAFGYGGAKTVQDKEVQPTE

SNPs (tot: 48)

Position	A %	C %	G %	T %	Probability
714		9		90	0.999919
1382	3	96			0.993037
1387		4		95	0.995482
1436		4	8	88	0.999262
1437	8			91	0.999766
1439		91	8		0.999766
1442		6		87	0.992016
1444	3	9	84	3	0.999999
1445	6	90		3	0.997544
1447			6	93	0.999364
1448		93	6		0.999453
1451		10	89		1.0
1453	6	89		3	0.998304
1455			7	92	0.999602
1521		72		27	1.0
1709	10			90	0.90298
1742		10		90	0.90298
1821		11		88	0.923564
1822		11		88	0.923564
1834		10		90	0.90298
2018	12	87			0.992554
2020	14		85		0.993533
2021			85	14	0.993533
2022	85			14	0.993533
2502	5	94			0.999994
2503		5		94	0.999994
2504	7	84	7		0.999995
2505	7	84		7	0.999995
2506		88	8	2	0.999999
2507		68	2	11	1.0
2508	88	2	8		0.999999
2509	11		2	82	1.0
2510	14	71		14	0.984337
2511	83			16	0.994512
2512		20	80		0.995493
2513		80		20	0.995493
2515	60			40	1.0
2516	60	20	20		0.99255
2517			80	20	0.995493
2518	20	20	60		0.99255
2519	20	20		60	0.99255
2521	20	60		20	0.99255
2522	60		20	20	0.99255
2523	20	60		20	0.99255
2527			60	40	1.0
2530	66		33		0.997452
2532	66		33		0.997452
2533			33	66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
2346	2358	CTG CTG CTG CTG C	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain