SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene15953

Length: 912 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene15953

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam00083, Sugar_tr, Sugar (and other) transporter	-	-	7.0e-29	32%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Blast2go	d-xylose-proton symporter-like 2	-	-	0.0	72%

Source	GOs	Term	Type	Identity
Blast2go	seed germination	GO:0009845	Biological Process	72%
Blast2go	positive regulation of flower development	GO:0009911	Biological Process	72%
Blast2go	glucose transport	GO:0015758	Biological Process	72%
Blast2go	fructose transport	GO:0015755	Biological Process	72%
Blast2go	response to nematode	GO:0009624	Biological Process	72%
Blast2go	fructose transmembrane transporter activity	GO:0005353	Molecular Function	72%
Blast2go	glucose transmembrane transporter activity	GO:0005355	Molecular Function	72%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	72%
Blast2go	plant-type vacuole membrane	GO:0009705	Cellular Component	72%

Source	InterPros	Term	Type	Identity
Sma3	Lipocalin	IPR002345	-	-
Sma3	Sugar/inositol transporter	IPR003663	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-

Full-Lengther Next Prediction

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
514	80		20		0.995493
515	20		80		0.995493
568		88	11		0.923564
690		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain