SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene15927

Length: 1249 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene15927 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	translation initiation factor eIF-5 [Arabidopsis thaliana] sp\|Q9S825.1\|IF5Z_ARATH RecName: Full=Probable eukaryotic translation initiation factor 5-2; Short=eIF-5 2 gb\|AAF17676.1\|AC009243_3 F28K19.5 [Arabidopsis thaliana] gb\|AAG51628.1\|AC012193_10 putativ	-	-	8.0e-34	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Blast2go	eukaryotic translation initiation factor 5	-	-	0.0	60%

Source	InterPros	Term	Type	e value	Identity
Sma3	Translation initiation factor IF2/IF5	IPR002735	-	0.0	-
Sma3	eIF4-gamma/eIF5/eIF2-epsilon	IPR003307	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AE08

Fln msg:

Fln protein: MVMLTIPEEGTTQRTDMKTVGKTVSKNRMAEPESKPAAENGKKTTKLMPDSDDKEEETDVGEKDLKPAKGLSIHDQLLAHFNDFLQREKSPNQLVEYMQSLNGSPQEVMTALFEALFKGVGKGFSKEAAKRKIYLSKALQNEDSQLLLLNAIDAFCKHASADAVKEVALVLKVLYDDDILEEDVIFQWYDNRTLGAEGNKSSMWKNVKPFVEWLRSAESESEED*

Protein Length: 226

Fln nts: GCAAGAAAGATCCAAAGAAGAAGAAAAACAACGATGTGAATTCAAAGGTGTTCAAAGAAGAAATCTTCTGATGAGGATGATCAATCTCCTCGAGGGAGCCAAGAAGCCCATGATGAGGAAGCTGATGATGATGATGATGATGATGATGGAGTGGAATGGCAGACTGACACATCTGTTGAGGCTGCTCAGAAGAGGATTAAGGAGCAACTTACTCTTGCTACCAGTGAA_-_ATGGTGATGTTAACTATACCTGAAGAAGGTACAACGCAACGTACTGATATGAAGACTGTAGGGAAGACTGTTTCAAAGAACAGAATGGCTGAGCCTGAGAGCAAGCCTGCTGCTGAGAATGGTAAGAAAACCACAAAACTCATGCCAGACAGTGATGATAAGGAGGAAGAGACTGATGTTGGGGAGAAAGACTTGAAGCCAGCTAAAGGGCTAAGCATTCACGATCAGCTTCTTGCTCATTTTAATGATTTTCTTCAAAGGGAAAAGTCTCCTAATCAGTTGGTGGAGTACATGCAATCCCTCAATGGTTCTCCGCAGGAAGTGATGACTGCATTGTTTGAGGCCCTTTTTAAGGGTGTTGGCAAGGGATTTTCCAAGGAGGCTGCAAAGAGAAAGATCTACTTGTCGAAAGCTCTTCAAAATGAAGATTCCCAGTTGCTGCTGCTGAATGCAATTGATGCTTTTTGCAAGCATGCCAGTGCAGATGCAGTCAAGGAGGTTGCATTGGTTTTGAAAGTTTTATATGATGATGACATATTGGAAGAAGATGTTATTTTCCAGTGGTATGATAATCGTACTTTGGGTGCTGAAGGCAATAAATCTTCAATGTGGAAAAATGTTAAGCCATTTGTTGAGTGGCTCAGAAGTGCCGAGTCTGAATCCGAAGAGGATTAG___TTAGCGAACTAAATATCTTTGACCATTTTAAGTAGTGTCACCGAATAGACTAGTCTGTTTTTGTTTTTCTCTGAGATTCTAGAGGCAGGATGAGACATTTCCACAGCATTATATCTTTTATATTATCTGGTTTGAATAAAAATATTCAGGAACCATGTTGTGTTTTGAATTATTGCACCTGTCTGATTCTGACATTTTGTTCAGATAAATATTATTTATCAACCTTTCCATTATTATTCAGATATGATGTGGTTATAAATTTTTGTTAGGTTTGATTATATATATTGTACTCTTTGAATGGTGCGGGGTTTGATGATGCCCAATCATGATTGGTGATTAATTTCTC

Fln Alignment:

Contig15927___MVMLTIPEEGTTQRTDMKTVGKTVSKNRMAEPESKPAAENGKKTTKLMPDSDDKEEETDVGEKDLKPAKGLSIHDQLLAHFNDFLQREKSPNQLVEYMQSLNGSPQEVMTALFEALFKGVGKGFSKEAAKRKIYLSKALQNEDSQLLLLNAIDAFCKHASADXXXXXXXXXXXLYDDDILEEDVIFQWYDNRTLGAEGNKSSMWKNVKPFVEWLR
D5AE08_______________MVMLTIPEEDTKQRADIKAVEKTVSKNAMAEPENKPAAENGKISTKPMPESDDEEEVSDVDAKDLKTAKGLSIHDQLLVFFNDFLQKEKSPNQLVEYMQSLSGSPQELMTALFEALFKGVGKGFSKEVAKKKIYLSKALQIEDSQLLLLNAVDAFCKHASADAVKEVALVLKVLYDDDILEEDVIFHWYDNRTLGAEGNNSSMWKNIKPFVEWLR

SNPs (tot: 57)

Position	A %	C %	G %	T %	Probability
181	66		33		0.997452
196		33		66	1.0
426		10		90	0.90298
666		87	12		1.0
667	12	87			1.0
668		87	12		1.0
670			12	87	1.0
673	86	13			1.0
674	86	13			1.0
676	13		84		1.0
677			93	6	0.999999
679	6	80		13	1.0
680		93	6		0.999999
681	13			86	1.0
682		93	6		0.999999
684	80	6	13		1.0
687	82	2	15		1.0
689	3	3	6	87	0.990219
694	6			87	0.992016
696	87	3	9		1.0
698		90	6		0.997952
701	3		6	90	0.997952
741	89		10		0.999919
743		89	10		0.999919
748		11		88	0.999937
751		11	88		0.999937
753	11		88		0.999952
754	88		11		0.999952
755		86	13		0.999973
757		13		86	0.999973
758	13			86	0.999973
760		87	12		0.999964
761	12	87			0.999964
763			12	87	0.999964
804	84	15			0.999986
805	15			84	0.999986
808		15		84	0.999986
809	15			84	0.999986
812		84	15		0.999986
813		84		15	0.999986
815	16			83	0.999991
816		16		83	0.999991
817			16	83	0.999991
852			11	88	0.923564
854			11	88	0.923564
855	11			88	0.923564
880		11		88	0.923564
953	90		10		0.90298
1085	84			15	1.0
1173	11			88	0.923564
1175	11	88			0.923564
1177		88		11	0.923564
1205		42		57	1.0
1217	16		83		0.994512
1220	33		66		0.997452
1221		33		66	0.997452
1222	33			66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
1102	1127	CAT CAT CAT CAT CAT CAT CAT CAT CA	26

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain