SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene15838

Length: 1580 nt

Origin of reads: Biogeco2 v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene15838 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Alpha-galactosidase 1 n=1 Tax=Pisum sativum RepID=Q5ZP79_PEA	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	alpha-galactosidase alpha-n-	-	-	76%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, clan GH-D	IPR000111	-	-
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	Glycoside hydrolase, family 27	IPR002241	-	-
Sma3	Glycosyl hydrolase, family 13, all-beta	IPR013780	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWJ8

Fln msg:

Fln protein: MDFRYGCFIYAVLLALICSVVTCGADNRTLGMRLLQNGLAQTPPMGWNSWNHYGCSINENIIRETADALVSNGLSKLGYTYVNIDDCWAEPNRDQNGRLVASASKFPSGIKALADYVHSKGLKLGIYSDAGYYTCQKQPGSLGHEEVDANTFAFWGVDFLKYDNCYNDGSKPESRYSKMHDALLRTQWPIFYSVCEWGLDVPATWARQIGSSWRTTQDIEDKWESIVSHADQNNEYASFAGPGGWNDPDMLEVGNGKMTTEEYASHFSIWALMKSPLLIGCDVTSMDKKTYGILSNSEVIAVNQDPLGVQGTKVSKQVDLEVWAGPLSNNSVVVVLWNKSNSRATITAKWEDIGLNRSALFSVRNLWTHRELEENYQGSLTASVKPHGCMMYVLTSVSLQ*

Protein Length: 402

Fln nts: AACCAAATACAGCTCTCGTGGGTATAAATCTCCCTTCTCCTTCCTAGAGTATACCATTGTCATTATTCATTCTTACCTTCCACTTTAGGAAACC_-_ATGGATTTTCGATATGGCTGTTTCATATATGCCGTGCTCTTGGCCCTGATATGTTCGGTGGTGACCTGTGGTGCTGACAATAGAACCTTAGGAATGCGTTTGCTTCAAAATGGCCTTGCGCAGACTCCTCCTATGGGCTGGAATAGCTGGAATCACTACGGCTGCAGCATCAATGAGAATATTATAAGAGAAACAGCTGATGCTTTGGTATCAAATGGTCTCTCTAAATTGGGGTATACCTATGTCAATATAGATGATTGCTGGGCAGAGCCTAATCGTGATCAAAATGGGAGATTGGTTGCAAGTGCTTCAAAGTTTCCCTCTGGTATCAAGGCTCTTGCTGATTATGTGCACAGCAAGGGCCTCAAACTCGGAATATATTCAGATGCTGGGTACTATACCTGTCAAAAGCAGCCAGGTTCCTTGGGACATGAGGAAGTGGATGCCAATACCTTCGCTTTCTGGGGAGTGGATTTTCTCAAATATGACAACTGTTACAATGATGGCTCTAAGCCTGAAAGCCGGTACTCAAAGATGCATGATGCACTTTTGAGAACTCAGTGGCCAATATTCTATTCGGTGTGTGAATGGGGGTTGGATGTTCCGGCCACCTGGGCTCGGCAAATTGGAAGCAGTTGGAGGACAACACAAGACATTGAGGACAAGTGGGAAAGCATTGTATCCCATGCAGATCAAAACAATGAATATGCAAGCTTTGCTGGTCCAGGTGGATGGAATGATCCAGATATGTTGGAAGTCGGAAATGGCAAAATGACTACCGAGGAATATGCTTCACATTTCAGCATCTGGGCTCTGATGAAGTCACCACTATTGATTGGATGTGATGTAACATCTATGGACAAGAAGACTTACGGAATCCTGAGTAACTCTGAGGTTATTGCAGTCAATCAAGATCCTTTGGGAGTACAGGGGACAAAAGTGAGCAAGCAAGTGGACCTGGAGGTATGGGCAGGTCCTCTATCTAACAACAGTGTAGTTGTGGTTCTATGGAATAAAAGCAACTCAAGAGCTACAATCACTGCCAAATGGGAAGATATTGGATTGAATCGCTCAGCTCTTTTCAGCGTTAGAAACTTATGGACGCACAGAGAATTGGAAGAAAATTACCAAGGTAGTCTCACAGCATCAGTGAAGCCTCATGGATGTATGATGTATGTTTTAACCAGCGTTTCTCTCCAGTGA___CCATCAAACTAATGATTGGAATTGCGAAAGTTCCAGATTATTTTTTCATATATGTTAAGATTTGGATAGTTTATGTTCTGATTATTGGTGGGTGATGCCTACTCAAAACATCACTTTCCATTTTCTTAATTAATAAAATAGAGAAGAAAGTGAAAATGCAAACGTTTTATTTTTCTCTTAGCAAGTTACAATGTCTTCAGAGTTTCTTATTATGTTAGTGTTATTGTTATGGTAATCAAAATAGTGGCATATTTTAGTGCTGGATGAATTTAAGAATATTCTG

Fln Alignment:

Contig15838___MDFRYGCFIYAVLLALICSVVTCGADNRTLGMRLLQNGLAQTPPMGWNSWNHYGCSINENIIRETADALVSNGLSKLGYTYVNIDDCWAEPNRDQNGRLVASASKFPSGIKALADYVHSKGLKLGIYSDAGYYTCQKQPGSLGHEEVDANTFAFWGVDFLKYDNCYNDGSKPESRYSKMHDALLRTQWPIFYSVCEWGLDVPATWARQIGSSWRTTQDIEDKWESIVSHADQNNEYASFAGPGGWNDPDMLEVGNGKMTTEEYASHFSIWALMKSPLLIGCDVTSMDKKTYGILSNSEVIAVNQDPLGVQGTKVSKQVDLEVWAGPLXXXXXXXXXXXXXXSRATITAKWEDIGLNRSALFSVRNLWTHRELEENYQGSLTASVKPHGCMMYVLTSVS
A9NWJ8_______________MDFQYGCFVHAVLLAFACCAVTCGAQNTTSGRSLLQSGLAQTPPLGWNSWNHFGCHINEDVIRETADALVSTGLSKLGYQYVNIDDCWAELNRDSNGRLVASASRFPSGIKALADYVHSKGLKLGIYSDAGYYTCQKQPGSLGHEQVDADTFAYWGVDYLKYDNCYNDGSKPENRYPKMRDALLSTRRPIFYSLCEWGLDVPATWARQIGSSWRTTDDIEDKWESMISRADQNNEFAQYAGPGGWNDPDMLEVGNGNMTPEEYGSHFSIWALMKAPLLIGCDVTSMDKKTYGILSNSEVIAVNQDPLGVQGKKVNKLGDLEVWAGPLSNNRVAVVLLNRSNSRTIITAKWEDIGLNPSAVVRVRNLWRHRELEANHQGSLTASVKPHGCKMYVLTSVS

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
1194		83	16		0.994512
1204	14		85		0.993533
1245			12	87	0.992554
1291	16	83			0.994512
1357			85	14	0.993533
1444		66	33		1.0
1477			75	25	0.996473
1483		75		25	0.996473
1492	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain