SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene15812

Length: 1468 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene15812 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Proteasome subunit beta type-3 n=2 Tax=Picea RepID=PSB3_PICMA	-	-	99%
FL-Next	sp=Proteasome subunit beta type; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Blast2go	proteasome subunit beta type	-	-	95%

Source	GOs	Term	Type	Identity
Blast2go	peptidase activity	GO:0008233	Molecular Function	95%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	95%
Blast2go	proteasome complex	GO:0000502	Cellular Component	95%

Source	InterPros	Term	Type	e value	Identity
Sma3	Proteasome, subunit alpha/beta	IPR001353	-	0.0	-
Sma3	Proteasome, beta-type subunit, conserved site	IPR016050	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NRN1

Fln msg:

Fln protein: MSIFEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRIFKIHDKLYVGLSGLATDVQTLYQRFAFRHKLYQLREERNMRPETFASLVSALLYEKRFGPYFCQPVIAGLGEDDKPFICTMDSIGAKELAKDFVVAGTAAESLYGACESMYKPDMEPEELFETISQALLASIDRDCLSGWGGHVYVVSPNQVIERTLKGRMD*

Protein Length: 206

Fln nts: GCGGTCAGAGTGAAAACATTTTATACGGGCAACAGATGTACGAACCAGGGTTTTATTCACCTTGTAAATAGTGCAACACAACAAGGTCGTAGAAAAAAAATGCAGTAACAGGCGTAGGGAAAGGACAAGGTCGGCTCCCCATTCCTAAATTTACACATGCCCAGCTGAGTTCTTGATTGCAGTTTGCTTTCTCAAGAATAACTTCATTAACATACAAAGAAACCTAGCTGCAGCTTGTGGAGACAGACCCAATTCTCTACACCCTCTACATCTGTATAAGCA_-_ATGTCGATATTTGAATATAATGGAAGTGCTTTGGTGGCTATGGTTGGGAAAAACTGCTTTGCCATTGCCAGTGATCGCCGTTTAGGTGTGCAACTGCAAACAATAGCTACTGATTTTCAACGCATTTTCAAGATTCATGATAAGCTATATGTGGGTCTTTCTGGATTGGCCACAGATGTGCAGACTTTGTACCAAAGATTTGCTTTTCGCCACAAGCTTTATCAGCTGCGTGAGGAAAGAAATATGAGGCCAGAAACTTTTGCAAGTCTTGTTTCTGCGTTACTTTATGAAAAGAGGTTTGGTCCTTACTTTTGTCAACCAGTGATTGCTGGATTAGGGGAAGATGATAAACCATTTATCTGCACCATGGATTCGATTGGTGCCAAGGAACTGGCAAAGGACTTTGTTGTGGCTGGTACTGCTGCAGAGTCACTTTATGGTGCATGCGAGTCTATGTATAAGCCAGACATGGAACCGGAAGAGCTATTTGAGACGATTTCCCAGGCTTTATTGGCATCAATTGATCGTGATTGTTTGAGTGGCTGGGGAGGCCATGTTTATGTCGTGTCACCAAATCAAGTGATTGAGCGCACATTGAAGGGACGCATGGACTGA___GCTGTTTTTTTGCAAGAGAAATTACAGGTCTTAGCAATGTTATTGGTGGCTATTAAATGAGCAGAAATGTACTTTAGTACATAGTGGAGTCAGAGTTGTTGAAAACATTAATACATTTGATGTCATTGCACAAGAAGCCACCTAGGCTTTCATTACTTGCCTCTCAGTTCAATCCTCCAGAGGCCAATGCAAACTGAACCTTTTCCTGCATCTCTAATCAATTTGCAATCAAGTTTTTCTATGGACCAAGCACACAATCAAATTTCACTTATCCTAATTTTAAATTGGTACATTTTGAGGGAGCAACATTTTCTGAAATTTTGTACTCCTATGTGAGATACTGATTTCTTTGCTTGTTATAAAGTGGTGTTCCTTTTCCATGTATTGGCATTCAGAAAGTAGCTACCCAGTCAATAAAATTAATGCTCCGTGAAATATTACACCAACTATTTCACATCTGCAAATGAGAACCTTCGGTGCTGTAACATTTGTGAAGGAAGTATTTGAAAAATGCGGTTATTTTTTGTCATCTGCTGCATATTATGTTACATTTTGCTTTGAGGTTTATCAC

Fln Alignment:

Contig15812___MSIFEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRIFKIHDKLYVGLSGLATDVQTLYQRFAFRHKLYQLREERNMRPETFASLVSALLYEKRFGPYFCQPVIAGLGEDDKPFICTMDSIGAKELAKDFVVAGTAAESLYGACESMYKPDMEPEELFETISQALLASIDRDCLSGWGGHVYVVSPNQVIERTLKGRMD
A9NRN1_______________MSIFEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRIFKIHDKLYVGLSGLATDVQTLYQRFAFRHKLYQLREERNMRPETFASLVSALLYEKRFGPYFCQPVIAGLGEDDKPFICTMDSIGAKELAKDFVVAGTAAESLYGACESMYKPDMEPEELFETISQALLSSIDRDCLSGWGGHVYVVSPNQVIERTLKGRMD

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
996		18		81	0.999994
1035	80		20		0.995493
1100	80			20	0.995493
1200	14		85		0.993533
1201		14		85	0.993533
1203			85	14	0.993533
1204	85			14	0.993533
1316			16	83	0.994512
1329			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain