SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene15809

Length: 2229 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene15809
AAAATATTTAGTCCTAATGCCAATGCCAGTATGCCAATATGAAGAACTATTGTTCCTGCATGGATGATGATGGCACAAAATGTCTCCAATATGATTCTGATGCACCTCCCCTCCCACGAATAGAAAATATTATTCTTCAGCCTTTCTCCATGCTTGACCGATGCATATCTCCATAATACCCCTAACAGATGCAGCATACACCATCCTACCTATTATATTATGGATGATAATGGCACAAATGATAGCAATAACGACCACATGCAACAAAAAAAAAATGGAGGATATGCTGACAACAACAACATCAATGATAACAGCTAACAATGATGCAACCTGATGCACCAACATGATGCTGATGATGGCATTGATTTCTAATTTCATGCTTCAAAAGGAGCATTAAAGAGTAGAATACGTCCCTCATAATGTTGTTGCTGTCAACCTAATCTGGTGTCACTGTGATGCTGATGAGGATACACCATTGATATCTGCTAAAGGAACACCAGGAGCTCCATCAACTGCATGTCCCATAGGTCCAGATGAATCTTTCTTTCTTCCAAAGGGATTCTTTGAATACTGTATTCTCATGCCACCTCGATCTGAGCTGGTGAGAACTGCACCTTGCAAGTTGTTGTGGACAGCCACAGCACTATGTAGATCCTCGAATTCTATAAAGCAAACTGTGCTCCTTCCCTGCCGCAAGACTTTCATCTGTCGGAAACCAGGTTGTCCACTAAAAAGCCCTCGCAGCTCAGTCTCACTTGTACTCTCACCAAGATTGCCAATGAATAAAGTATTACAGGGGGGATTGTCCTTCATATTCTCTTTTCACATACAAATTTTTCTTAGCCATTTCCGCACGCAAAATAGAATTTGTTTCAGCATCAAATACCAAATTCTGAAGAGCATCTCTAGCTTGCATTGCCATTTGTGATGTGGTGAAAAGCGCAAAACCCATCGCCTGGTCACCTTTGAAATTTAATTGTGATGCTTCATAACCTGGCCACCATCTTAACAGATTTTGGAGTTCTCGTTGTCACTGGTTCGTGAATATTTTCTAGAGCTTCCAAAGCCGTGGGAACTTTAGGCCAAAGAAATTTTGTAGGAAAGAAATCGGAGACTCATATCATGTTGGCCATCTTCAACAGCTCTGTGGCCAGCGGCCCTGAGGAGCTTAGAATTCCTGGGGACAGAAGCCCTAATTATCCCAAGAAGGATTCTTCAGATCTGCTGAGCTCCTTCTTCAGTGGCTTTCCGCAGGCTATTTCTTTAAAGATAAACGGCATGGGCGACATGGCATATACACATGAAAAGCAGGATTTGCTCCGACCCAGATCTTTTACCGTCAAGGACGATGTCTTTTGCCTGTTCGAAGGCACGCTGGAGAATTTGCCGAGTCTGAGGCAGCAATACGGTCTTTCAAAGTCTGTAAATGAGGGTTTACTTGTGATCGAAGCTTATAAAACCCTAAGGGATCGTGCTCCATATCCTGCCAGTCATGTTGTTGGACATTTGGACGGGCAATTTGCGTTTATAATCCTCGACAGAGCTACTTCAAGCATCTTTGTTGCTACGGATTCACACGGGAAAATACCCTTCTATTGGGGAATTACTCGGGATGGAAGCCTAGCGTTCTCTGATGATGCTGAGCTCTTGAAAGGGGCTTGTGGCAAGTCCCTTGCTTCGTTCCCTCAAGGTTGTTTCTTCTCGAGCGCTCTGAGTCTGCGAAGCTACGAGCATCCTAAAAATAAAGTGACAGCCGTTCCAGCCATGGAGGAGGAGCTCTGCGGCACAACATTTAAGGTTGAAAATGAGAGCGTCATTGCTGGTATCTTGTAAAATTATTGCAGATCTGGATCATCTGACCAGCAGATGGACAAACTACTCTTAGAATAAGTTTTGTGCATAGATACCTGAAAGATCTGGTGAAGCAGGTGGCTGCGACTGTTAATACGCCAGAGATGTGGAGTCATTAGATATACTTCAGAGATAGCAGATAGGTGCCTTTTTGCTGATTCTGTTTTCAGTTTTTAAGTTTAGCTACTTGGATTTTCTCCTCAACGCCAGTGGCCTGTGTAAGCTTCCGACTTGCTTAATTCAATTTCAGAAGGTTTTGAAAATGCGCCCCAGATTTATGACCACAGAAACAGTTGGTGCGATGTCTTTACGTATAAAATTTATGATAAAAATGAGTTAATTATTTGGGAAAATAGAAATCCAGGTTGCCAACTCAAT

Ace file of the UniGene sp_v2.0_unigene15809 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Aluminium induced protein n=1 Tax=Avicennia marina RepID=Q94KH9_AVIMR	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	auxin aluminum responsive-like protein	-	-	79%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NMJ2

Fln msg:

Fln protein: MLAIFNSSVASGPEELRIPGDRSPNYPKKDSSDLLSSFFSGFPQAISLKINGMGDMAYTHEKQDLLRPRSFTVKDDVFCLFEGTLENLPSLRQQYGLSKSVNEGLLVIEAYKTLRDRAPYPASHVVGHLDGQFAFIILDRATSSIFVATDSHGKIPFYWGITRDGSLAFSDDAELLKGACGKSLASFPQGCFFSSALSLRSYEHPKNKVTAVPAMEEELCGTTFKVENESVIAGIL*

Protein Length: 238

Fln nts: AAAATATTTAGTCCTAATGCCAATGCCAGTATGCCAATATGAAGAACTATTGTTCCTGCATGGATGATGATGGCACAAAATGTCTCCAATATGATTCTGATGCACCTCCCCTCCCACGAATAGAAAATATTATTCTTCAGCCTTTCTCCATGCTTGACCGATGCATATCTCCATAATACCCCTAACAGATGCAGCATACACCATCCTACCTATTATATTATGGATGATAATGGCACAAATGATAGCAATAACGACCACATGCAACAAAAAAAAAATGGAGGATATGCTGACAACAACAACATCAATGATAACAGCTAACAATGATGCAACCTGATGCACCAACATGATGCTGATGATGGCATTGATTTCTAATTTCATGCTTCAAAAGGAGCATTAAAGAGTAGAATACGTCCCTCATAATGTTGTTGCTGTCAACCTAATCTGGTGTCACTGTGATGCTGATGAGGATACACCATTGATATCTGCTAAAGGAACACCAGGAGCTCCATCAACTGCATGTCCCATAGGTCCAGATGAATCTTTCTTTCTTCCAAAGGGATTCTTTGAATACTGTATTCTCATGCCACCTCGATCTGAGCTGGTGAGAACTGCACCTTGCAAGTTGTTGTGGACAGCCACAGCACTATGTAGATCCTCGAATTCTATAAAGCAAACTGTGCTCCTTCCCTGCCGCAAGACTTTCATCTGTCGGAAACCAGGTTGTCCACTAAAAAGCCCTCGCAGCTCAGTCTCACTTGTACTCTCACCAAGATTGCCAATGAATAAAGTATTACAGGGGGGATTGTCCTTCATATTCTCTTTTCACATACAAATTTTTCTTAGCCATTTCCGCACGCAAAATAGAATTTGTTTCAGCATCAAATACCAAATTCTGAAGAGCATCTCTAGCTTGCATTGCCATTTGTGATGTGGTGAAAAGCGCAAAACCCATCGCCTGGTCACCTTTGAAATTTAATTGTGATGCTTCATAACCTGGCCACCATCTTAACAGATTTTGGAGTTCTCGTTGTCACTGGTTCGTGAATATTTTCTAGAGCTTCCAAAGCCGTGGGAACTTTAGGCCAAAGAAATTTTGTAGGAAAGAAATCGGAGACTCATATC_-_ATGTTGGCCATCTTCAACAGCTCTGTGGCCAGCGGCCCTGAGGAGCTTAGAATTCCTGGGGACAGAAGCCCTAATTATCCCAAGAAGGATTCTTCAGATCTGCTGAGCTCCTTCTTCAGTGGCTTTCCGCAGGCTATTTCTTTAAAGATAAACGGCATGGGCGACATGGCATATACACATGAAAAGCAGGATTTGCTCCGACCCAGATCTTTTACCGTCAAGGACGATGTCTTTTGCCTGTTCGAAGGCACGCTGGAGAATTTGCCGAGTCTGAGGCAGCAATACGGTCTTTCAAAGTCTGTAAATGAGGGTTTACTTGTGATCGAAGCTTATAAAACCCTAAGGGATCGTGCTCCATATCCTGCCAGTCATGTTGTTGGACATTTGGACGGGCAATTTGCGTTTATAATCCTCGACAGAGCTACTTCAAGCATCTTTGTTGCTACGGATTCACACGGGAAAATACCCTTCTATTGGGGAATTACTCGGGATGGAAGCCTAGCGTTCTCTGATGATGCTGAGCTCTTGAAAGGGGCTTGTGGCAAGTCCCTTGCTTCGTTCCCTCAAGGTTGTTTCTTCTCGAGCGCTCTGAGTCTGCGAAGCTACGAGCATCCTAAAAATAAAGTGACAGCCGTTCCAGCCATGGAGGAGGAGCTCTGCGGCACAACATTTAAGGTTGAAAATGAGAGCGTCATTGCTGGTATCTTGTAA___AATTATTGCAGATCTGGATCATCTGACCAGCAGATGGACAAACTACTCTTAGAATAAGTTTTGTGCATAGATACCTGAAAGATCTGGTGAAGCAGGTGGCTGCGACTGTTAATACGCCAGAGATGTGGAGTCATTAGATATACTTCAGAGATAGCAGATAGGTGCCTTTTTGCTGATTCTGTTTTCAGTTTTTAAGTTTAGCTACTTGGATTTTCTCCTCAACGCCAGTGGCCTGTGTAAGCTTCCGACTTGCTTAATTCAATTTCAGAAGGTTTTGAAAATGCGCCCCAGATTTATGACCACAGAAACAGTTGGTGCGATGTCTTTACGTATAAAATTTATGATAAAAATGAGTTAATTATTTGGGAAAATAGAAATCCAGGTTGCCAACTCAAT

Fln Alignment:

Contig15809___MLAIFNSSVASGPEELRIPGDRSPNYPXXXXXXXXXXXXSGFPQAISLKINGMGDMAYTHEKQDLLRPRSFTVKDDVFCLFEGTLENLPSLRQQYGLSKSVNEGLLVIEAYKTLRDRAPYPASHVVGHLDGQFAFIILDRATSSIFVATDSHGKIPFYWGITRDGSLAFSDDAELLKGACGKSLASFPQGCFFSSALSLRSYEHPKNKVTAVPAMEEELCGTTFKVENESVIAGIL
A9NMJ2_______________MLAIFNNSVASGPEELRIPGDRSPNYPKKDSSDLLSSFFNGFPQAISLKVGGMGDMAYTHEKQDLLRPRSFNVKDDIFCLFEGTLENLASLRQQYGLSKSVNEGLLVIEAYKTLRDRAPYPASHVVGHLDGQFAFIILDKATASVFVATDSYGKIPFYWGITADGSLAFSDDAELLKGACGKSLASFPQGCLFSSALNLRSYEHPKNKVTAVPAMEEEICGTTFKVENESVLAGIL

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
898	97	0			0.987066
1121	32		64	1	1.0
1176		3		96	0.988939
1177	94	5			0.999994
1178		5	94		0.999994
1179	90	5		1	0.999945
1181	94			5	0.999996
1186		25		75	0.996473
1187	25	75			0.996473
1189	25	75			0.996473
1190	25		75		0.996473
1191	75		25		0.996473
1193		75		25	0.996473
1194		75	25		0.996473
1197	75			25	0.996473
1199	25			75	0.996473
1200	25		75		0.996473
1201	75		25		0.996473
1961		33		66	0.997452
1962			33	66	0.997452
1964		33		66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
1929	1940	TGT TGT TGT TGT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain