SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene15782

Length: 1463 nt

Origin of reads: Inia v1 Biogeco2 v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene15782 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	BURP domain-containing protein n=2 Tax=Glycine max RepID=B2ZPK6_SOYBN	-	-	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	74%
Blast2go	burp domain-containing protein	-	-	61%

Source	InterPros	Term	Type	e value	Identity
Sma3	BURP domain	IPR004873	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PSN2

Fln msg:

Fln protein: MACNMWFTTALVVVVLLHVALSSEEVQAKSSASPTLSYWHSKLPRTPIPDALQELIFPFSSQKTSELLNAIREGNKVSTGEPALEPKLGRKGGPDASTQPIAPESLIRYGSAADDDAIIADPSLSAMFFLEEDLRIGAKLTLYRKNLERSSPDSRIFFLPRRLAEAISFSSDKLSVALEMLNISQGSHTALAMKETLQVCESPANSGEIKYCPTSLESMIDYATSTLGTSGVSVLETNVPCNLNSQRYTITGIPFQSKSGLKSVICHSLTYPYAVYYCHQSHQTTAARVSLKGDDGSTGEGVTVCHTDTSGWNPQHLAFKVLNVKPGGAPICHFVSGEQVLWVPVN*

Protein Length: 348

Fln nts: ATGGGGACACGCAAACTGATCAACGTGATTCAGGATAATACTATTTTGAAGGATTTGCTTTCATTTTCAACATAGTGATTGATGC_-_ATGGCATGCAACATGTGGTTTACTACTGCCCTCGTTGTTGTTGTTCTGCTGCATGTGGCACTGTCCAGTGAAGAAGTGCAGGCTAAGTCTTCTGCATCTCCGACATTGAGTTACTGGCATAGCAAGTTGCCAAGGACGCCCATTCCCGATGCTCTGCAGGAACTCATTTTCCCTTTCTCATCCCAGAAGACGTCGGAACTGCTGAACGCGATAAGAGAGGGTAACAAAGTTTCTACAGGAGAACCTGCCCTTGAACCTAAACTTGGGCGCAAAGGAGGGCCGGATGCCAGCACCCAACCCATCGCGCCGGAAAGCCTGATACGTTACGGTTCCGCGGCAGACGACGATGCCATCATAGCCGACCCTTCCTTGTCGGCGATGTTCTTCCTGGAGGAGGACTTGCGCATTGGAGCAAAGTTGACGCTCTACAGAAAAAATCTAGAGAGATCAAGCCCGGACAGTAGAATATTCTTCCTTCCGCGTCGTCTAGCTGAAGCTATTTCATTCTCGTCTGATAAACTCTCAGTAGCCTTGGAGATGCTCAACATATCCCAAGGATCCCACACAGCTCTTGCTATGAAGGAGACTTTACAAGTGTGTGAAAGTCCGGCAAATAGTGGAGAGATCAAATATTGCCCAACATCTTTGGAATCCATGATTGATTACGCCACATCGACTTTGGGGACCAGTGGTGTGAGTGTGTTAGAGACGAATGTACCCTGCAACCTCAACTCTCAGCGATATACTATCACTGGCATTCCTTTCCAGAGCAAATCCGGCTTAAAGTCAGTGATTTGTCACAGCCTGACATATCCATACGCCGTGTACTATTGCCATCAAAGTCACCAGACCACCGCTGCGCGGGTGTCTCTCAAGGGCGACGATGGCAGCACTGGAGAGGGAGTGACGGTGTGTCACACAGACACAAGTGGGTGGAATCCTCAACACTTGGCGTTCAAGGTTCTCAATGTCAAGCCCGGTGGTGCACCCATCTGCCACTTCGTCTCTGGCGAACAAGTTCTCTGGGTCCCTGTCAACTAG___ATTCTCTATCTACGTATCATCTACAATCTGTATCTAGTGTGTATTGCTCTTCTCCTTCTCTGTATTCGACGAGAAGATCAAGCCTATAGTGCCCCGCTTTTACGGCGCCATAAGATATATATGGACTGCCGTAAATAAAATAACGACGGCACCACATTATAATAAAATAATATCCAATGTAGTCCCGTAGTGGCCGAACACCTTCCGTCGCCTATTGTAAATTATAACGGGGCCTATGGACCATCCGCGCCACAATAGTGGCTATGACCATCTATGTAGTCATTATATTTTGTATTATTTTTTTATGACAATAATGAAAATATGTGTGTTGTGCAAA

Fln Alignment:

Contig15782___AKSSASPTLSYWHSKLPRTPIPDALQELIFPFSSQKTSELLNAIREGNKVSTGEPALEPKLGRKGGPDASTQPIAPESLIRYGSXXXXXXXXXDPSLSAMFFLEEDLRIGAKLTLYRKNLERSSPDSRIFFLPRRLAEAISFSSDKLSVALEMLNISQGSHTALAMKETLQVCESPANSGEIKYCPTSLESMIDYATSTLGTSGVSVLETNVPCNLNSQRYTITGIPFQSKSGLKSVICHSLTYPYAVYYCHQSHQTTAARVSLKGDDGSTGEGVTVCHTDTSGWNPQHLAFKVLNVKPGGAPICHFVSGEQVLWVP
C0PSN2_______________AKSSTSPTLSYWHLNLPTTPIPDTLRELISPLSSEKTSELLDAIREGKKVSMAEPDPTPKLGRKGGPDSVASQV-PQGIYIYGSAADDDIIAD-PSVSAMFFHEKDLHTGRKLTLYSTLLKRSSPDNRVFFLPRRLAEAIPFSSDKLSVALEKLDISQGSDTALAMKQTLKACEGPANSGERRYCATSLESMIDYTTSTLGTSSLNVLETNVPCKLESQKYTITGIPFQSKSGSKAVVCHSETYAYAVYYCHEAQHITTARVSLKGEDGSSGEGVAVCHTDTSGWNPQHLAFKVLNVKPGGAPVCHFVPNGEVLWLP

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
291		85	14		0.993533
831	75			25	0.996473
832	25			75	0.996473
1254		4		95	0.996599
1405	97		2		0.970572

SSRs (tot: 1)

Start position	End position	Sequence	Length
1334	1345	AAC AAC AAC AAC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain