SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene15746

Length: 2070 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2

UniGene Fasta

>sp_v2.0_unigene15746
CGTCGTGACCTTGGCTGTCACTCAATGGACGGACTGTAGTTTCTTGTGTACAAGTTTCAGATCTAAAGGTTTAAGCAGTGACTCGTGGCACGTCGTACAAGTTCGCCCTACTGAATTAGTCTAAAAGCAAGTCACTGTGGGAGATTTCACATAACTCTTCCTTGGAGAATCCAAATTGGGTCAGACTTGTGGCATTGGAAAGAGGACACAGAAGGCTACTATAGGTCGCAATTTCAGAATTGGATGATCTGAAATTACAGAGATACATCGGATTCAATATCAGGCTTCTGCAAAGTGAAAAATGTGTGTAGTTTTTATTTTTATTTTTGCATAAGCTTGGTTTAACGGAATTCAAAGGGCATAGTAAAGCATTATTATCAGTAACTGATGCCCCGAAAGAAAATGAAAACACCTAGTAAGGAACCTGAAAGCTCTAGCATGACTCATGAAGAAGAGGAAGAAATGATACATGATATATCAAAATTACAAGAACAGGTGCAACGCATGTCACTCTCACAAAAGCTAACAGAAGCTAAGATAAATGGCATGGAAGCTAAGATGGATGATTTGAAGACAGGCATGGAGGCTTTGAGGATGATTTGAAGACCGATTTGAAGACAGACATGGCAGATTTGAAGACAGATTTGACAAATTTTCTACAAGAAATACTTACTAATGGTGAAAAGGTTGTAAAGGAAACTCATGATGTGAACAAAAGAGCTGTTAATCATGATTCCATAGATGCTAATGTTGGATCGAAGACTCACCATATTCCAAAAATTGATATGAGGAAGTTTGATGGCAAGGATCCTGCAACATGGATATTACAGATGGAGCAATTCTTCGATCTCAATAATGTGCAAAACACACAAAAGGTACGTATGGCAACTTTATATTTGGAACCAAATCAGTTTGTATGGTATCAATGGCTTTGCTCTCGTAAACAAATTATCACTTGGGCAATTTTTACGGAAGAATTGATAGCACATTATGAGGATACAAAAAGCAACATTTTTTTAGCCAATGGATAAGTCTCAAACAAAAGGGTTCAATAATGGAGCACATTGAGGAGTTCCAAAAATTGAACATAAGGGTAAAAGATATTCCAGAGGAGCATAGGATTGATGTGTTCATAGGGTCTTTAAAGGATAATATCCAACATGATGTTCGCCTTTGGGAACCTGATTCATTAGAGAAGGCATTCAGGTTAGCAAGAAAAATGGAAAGCAAAATTATGGCAACCAGGAAGCATACCACTCACAACTATAAAGACGGAAGTGTTGTTGCCCCTAGTCTTCCACAACCTATAAGGTTGACACCACAACAATTGGAAGAAAAAAGAGCAAAAGGGCTTTGTTACAGTTGTGATAGCAAATACACTAAAGGCCATAAGTGTGCTGAGAAGAAATTATTCTACATAGATTGTGAAGAGGAAGAAGAAAGGGAGCAAGAAAGGTCAAAAGAAGAGGATATACTCCAGGAACAAAGCCTAGATGAAGAACAAATAAATCCAACCATATCTTGTAATGCATTAGCAGGAATTACCACTCCTCAAACCATCAAGATAGAAGGACAAATCAAGAAGAAAAAGGTAATAGTGTTGATTGATTCAGGAAGCACACACAATTTTATTCATTGTAAGGTAGCAAAAGAATTGAATTGCTTCCTATATCCAGCACCAGAGTGTCAAGTGATGATTGCAAATGGAGGAACAATAAATTGCTCTGGAAAGTGCCATAATATCAAGCTATCCATGGGAGAATATGTATTGACTAGCCCAATGCTTTCCATTCCAATGGGAGGTGCTGATGTTGTACTAGGAGTCCAATGGCTACAATCCTTGGGTACAATAGCTTTTAATTTTCAAGAACTTTTCATCAAATTTTCTACAGAAGGAAAGGAAGTTGAATTAAGGGGTATTGCAGGGAAACCAGGAAAGATAATCAGCTCTAATGGTATGACAAAGCTTCTAAAAAAGGAACAAAGAGGTGTAATTGCACAATTATGCTTGCTAGATGTTTCCACGTCGGAATCATCTATTTCTCCAAATCTCCAAAAAGTCCTGGACAA

Ace file of the UniGene sp_v2.0_unigene15746

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	PREDICTED: similar to polyprotein n=1 Tax=Vitis vinifera RepID=UPI0001983558	-	-	31%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	24%
Blast2go	retrotransposon unclassified	-	-	52%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: tr_plants

Fln subject: A5ASY8

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 806 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 155 - 1384

Fln protein: FEDRHGGFEDDLKTDLKTDMADLKTDLTNFLQEILTNGEKVVKETHDVNKRAVNHDSIDANVGSKTHHIPKIDMRKFDGKDPATWILQMEQFFDLNNVQNTQKVRMATLYLEPNQFVWYQWLCSRKQIITWAIFTEELIAHYEDTKSNIFLANG*

Protein Length: 156

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGGACGGACTGTAGTTTCTTGTGTACAAGTTTCAGATCTAAAGGTTTAAGCAGTGACTCGTGGCACGTCGTACAAGTTCGCCCTACTGAATTAGTCTAAAAGCAAGTCACTGTGGGAGATTTCACATAACTCTTCCTTGGAGAATCCAAATTGGGTCAGACTTGTGGCATTGGAAAGAGGACACAGAAGGCTACTATAGGTCGCAATTTCAGAATTGGATGATCTGAAATTACAGAGATACATCGGATTCAATATCAGGCTTCTGCAAAGTGAAAAATGTGTGTAGTTTTTATTTTTATTTTTGCATAAGCTTGGTTTAACGGAATTCAAAGGGCATAGTAAAGCATTATTATCAGTAACTGATGCCCCGAAAGAAAATGAAAACACCTAGTAAGGAACCTGAAAGCTCTAGCATGACTCATGAAGAAGAGGAAGAAATGATACATGATATATCAAAATTACAAGAACAGGTGCAACGCATGTCACTCTCACAAAAGCTAACAGAAGCTAAGATAAATGGCATGGAAGCTAAGATGG_-_ATGATTTGAAGACAGGCATGGAGGCTTTGAGGATGATTTGAAGACCGATTTGAAGACAGACATGGCAGATTTGAAGACAGATTTGACAAATTTTCTACAAGAAATACTTACTAATGGTGAAAAGGTTGTAAAGGAAACTCATGATGTGAACAAAAGAGCTGTTAATCATGATTCCATAGATGCTAATGTTGGATCGAAGACTCACCATATTCCAAAAATTGATATGAGGAAGTTTGATGGCAAGGATCCTGCAACATGGATATTACAGATGGAGCAATTCTTCGATCTCAATAATGTGCAAAACACACAAAAGGTACGTATGGCAACTTTATATTTGGAACCAAATCAGTTTGTATGGTATCAATGGCTTTGCTCTCGTAAACAAATTATCACTTGGGCAATTTTTACGGAAGAATTGATAGCACATTATGAGGATACAAAAAGCAACATTTTTTTAGCCAATGGATAAGTCTCAAACAAAAGGGTTCAATAATGGAGCACATTGAGGAGTTCCAAAAATTGAACATAAGGGTAAAAGATATTCCAGAGGAGCATAGGATTGATGTGTTCATAGGGTCTTTAAAGGATAATATCCAACATGATGTTCGCCTTTGGGAACCTGATTCATTAGAGAAGGCATTCAGGTTAGCAAGAAAAATGGAAAGCAAAATTATGGCAACCAGGAAGCATACCACTCACAACTATAAAGACGGAAGTGTTGTTGCCCCTAGTCTTCCACAACCTATAAGGTTGACACCACAACAATTGGAAGAAAAAAGAGCAAAAGGGCTTTGTTACAGTTGTGATAGCAAATACACTAAAGGCCATAAGTGTGCTGAGAAGAAATTATTCTACATAGATTGTGAAGAGGAAGAAGAAAGGGAGCAAGAAAGGTCAAAAGAAGAGGATATACTCCAGGAACAAAGCCTAGATGAAGAACAAATAAATCCAACCATATCTTGTAATGCATTAGCAGGAATTACCACTCCTCAAACCATCAAGATAGAAGGACAAATCAAGAAGAAAAAGGTAATAGTGTTGATTGATTCAGGAAGCACACACAATTTTATTCATTGTAAGGTAGCAAAAGAATTGAATTGCTTCCTATATCCAGCACCAGAGTGTCAAGTGATGATTGCAAATGGAGGAACAATAAATTGCTCTGGAAAGTGCCATAATATCAAGCTATCCATGGGAGAATATGTATTGACTAGCCCAATGCTTTCCATTCCAATGGGAGGTGCTGATGTTGTACTAGGAGTCCAATGGCTACAATCCTTGGGTACAATAGCTTTTAATTTTCAAGAACTTTTCATCAAATTTTCTACAGAAGGAAAGGAAGTTGAATTAAGGGGTATTGCAGGGAAACCAGGAAAGATAATCAGCTCTAATGGTATGACAAAGCTTCTAAAAAAGGAACAAAGAGGTGTAATTGCACAATTATGCTTGCTAGATGTTTCCACGTCGGAATCATCTATTTCTCCAAATCTCCAAAAAGTCCTGGACAA

Fln Alignment:

Contig15746___GGFEDDL---KTDLKTDMADLKTDLTNFLQEILTNGEKVVKETHDVNKRAVNH-----DSIDANVGSKTHHIPKIDMRKFDGKDPATWILQMEQFFDLNNVQNTQKVRMATLYLEPNQFVWYQWL----CSRKQIITWAIFTEELIAHYEDTKSNIF
A5ASY8_______________GGLQDGMSRMELGLTDKLHQMEETIHRLSEALLSNKERSSSNTNDRNGRVRNNRDNSKGQMEGGQQMFLSKLAKLEFPKYSGNDPTEWFNKVDQFFEYQGIPAAQKVSLXSFHLEGEANQWWQWLRRSYSEEGKEVAWADFEEELWARFGPTECEDF

SNPs (tot: 91)

Position	A %	C %	G %	T %	Probability
890	21	78			1.0
943		90		10	0.90298
949	11	88			0.923564
963		14	85		0.993533
964		14	85		0.993533
965	14	85			0.993533
973	80		20		0.995493
974		80		20	0.995493
988			80	20	0.995493
997	20		80		0.995493
1018		25		75	0.996473
1024	75		25		0.996473
1025	25		75		0.996473
1051	33		66		0.997452
1054	33	33		33	0.997753
1057	66		33		0.997452
1058		33		66	0.997452
1059	66	33			0.997452
1061	33			66	0.997452
1065			66	33	0.997452
1069	66		33		0.997452
1070	33			66	0.997452
1071		33		66	0.997452
1119	14		85		0.993533
1163	83		16		0.994512
1174		83		16	0.994512
1176		83	16		0.994512
1177		83	16		0.994512
1188			16	83	0.994512
1189	16		83		0.994512
1227	25		75		0.996473
1233	50	50			1.0
1244	25	75			0.996473
1248		75		25	0.996473
1250	25		75		0.996473
1392		33		66	0.997452
1398	33		66		0.997452
1410			33	66	1.0
1428			33	66	0.997452
1429	33			66	0.997452
1448	66		33		0.997452
1449			66	33	0.997452
1453		66		33	0.997452
1454	66			33	0.997452
1716	90		10		0.90298
1721		10		90	0.90298
1722	88	11			0.923564
1725			11	88	0.923564
1731	11	11		77	0.968132
1732		11	88		0.923564
1735	88	11			0.923564
1751	58		35	5	1.0
1758	12	87			0.999964
1776	34		65		1.0
1780	91		8		0.999807
1786	90		9		0.999842
1789	4	85		9	0.999726
1794		90		10	0.999898
1813	15		84		1.0
1848	5		78	15	1.0
1849	5	10	84		0.999846
1850	5		84		0.999846
1858	10		84	5	0.999846
1860		11		88	0.999952
1876	13	86			0.999973
1884		58	41		1.0
1886	41		58		1.0
1892		83		16	0.999991
1894	63		36		1.0
1895		72		27	1.0
1896	54		45		1.0
1905	10		90		0.90298
1906			90	10	0.90298
1909	10		90		0.90298
1911			11	88	0.923564
1928		88		11	0.923564
1937		90		10	0.90298
1939	10		90		0.90298
1944			90	10	0.90298
1947	90			10	0.90298
1950		90	10		0.90298
1953	10	90			0.90298
1954			10	90	0.90298
1956		10		90	0.90298
1959		20	20	60	0.999999
1961			90	10	0.90298
1962		10		90	0.90298
1963	90	10			0.90298
1964		10		90	0.90298
1968	90		10		0.90298
1977	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain