SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene15733

Length: 3404 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene15733
CTAGCTTTTATTGGATTTGGCTTTAGCTCCCACGATATTCACAGTGTCGACGATGATGGATAGGCCGGCCATGGCTCTGTGTGTGCTTTCAATTCTCATATCATGCAGCTTTGTATTGGTAAGAAGCGCATCGGATCACAGTTATAAAGTGGGAGACGAGGTGCCCCTGTATGTCAACAAGGTCGGCCCCTTTCAGAACCCCAGTGAGACATATCGTTATTTTGATTTGCCATTCTGTACTCCAGATCACGTGACTGAAAAGAAGGAGGCTCTTGGAGAAGTCTTAAATGGTGATCGCATGGTTGATGCTAGGTATCGGTTAAAATTCCGGGTGGACAAAGAGACCAACTCCCTTTGCAAGAAGAAGCTTTCAAAAGAGGATCTAGCAAAGTTCAGGGATGCTGTTAAGAATGATTACTACTTTCAGATGTACTATGATGATCTGCCTATATGGGGCTTTGTTGGAAAGGTTGAAAATGAAAATAAAGGCGATGAGAAGAAGCCCAGGCATTTGCTTTACAGACATGTGCACTTTGATGTCCTATATAACGATGACCGAGTCATAGAAATCAGTGTGCATACAGATCCTCAGTACGCTGTGGATATTACCGAGGACAAAGAGATTGAGGTTGAGTTCATGTACTCTGTTAAGTGGAAAAAAACTGACATCCTCTTTGAACGCCGAATGGATAAATATGCGAAATCTTCATTTTTGCCACAGCACTTGGAAATTCATTGGTTCTCCATTATCAATTCGTGTGTAACTGTTCTTCTCCTGACAGGATTCCTGGCCACAATTCTCATGCGCATTCTGAAGAATGATTTTATCAAATACTCTCGTGATGAGGAGTCAATGGATGATCAAGAGGAGACAGGATGGAAGTACATTCACAAGTCTCTATTTTCTGCTGTTCTTGGCTCTGGAACTCAGCTGTTAGTACTTACTATCTTTATCTTTGTGCTTGCATTGGTGGGTGTTTTCTATCCATACAACAGGGGAGCCCTATATACTGCTCTTGTTGTTATATATGCTCTTACATCTGGCATAGCAGGCTACGTTGCAGCTTCCTTTTATGGTCAACTTGAAGGACGAAATTGGGTAAGGAACCTTTTGCTTACAGGTTGCCTCTTTTGTGGGCCGCTATTCTTAACCTTTTCCTTCCTGAACACAGTTGCAATAGCATACAATGCCACAGCAGCCTTGCCATTTGGTACTATTGTTGTGATTGTTCTCATCTGGACACTAATCACCTTTCCTTTGCTCGTGTTGGGCGGCATAGCTGGTAAGAACAGCAAGGCAGAGTTTCAAGCTCCATGCCGTACCACAAAGTATCCCCGGGAGATTCCACCATTACCATGGTACAGGAGGACCGTTCCTCAAATGGCAATGGCAGGCTTTTTGCCATTTAGTGCCATTTATATTGAGCTATATTACATTTTTGCAAGTATCTGGGGTCACAAGATTTATACAATATATAGCATTCTCTTCATTGTATTCATCATCCTCATCATTGTTACCTCGTTTATTACAATTGCATTAACATACTTTCAGCTTGCAGCAGAGGATCATGAATGGTGGTGGAGGTCTGTTTTATGTGGAGGATCAACTGGTTTGTTCGTGTTTGGATACTGTTTCTATTATTACTTTGCACGATCTGATATGACTGGCTTCATGCAAGTGTCATTCTTCTTTGGATACATGGCTTGCATATGTTATGGCTTCTTCCTAATGCTGGGAACAGTTGGATTCCAGTCTTCTTTACTGTTTGTTCGCCATATATACCGTTCCATTAAGTGTGAGTAAAACTCTTCCAGTGCAGAGCACGCAGATTTTGGTCTATCTGTCCATCCTGTAGATTAGTTGCAGATTATAATGGTGCTGGCTAGCATACTCCTTTGAACATGCTTGTCCAAAATGGAGTTGGGCGGTAAGCTCTTACCGTTAGGTGAATGCTTACATGTGGTAAGTTTCTAGGAAATAAGGTGAATAATGACACTGGCAGATTAGGCTGAGGTGAACAATTGAAGAACTAGTATATAGTTATGTTGATGAATAGTTACGGAGGCATGTTTTATCTCGAACAGCTTTGTTTGGTGATACCTATTGTCAGGCATAAGCCAATTTTTTTAGGTCTCAAATCTATGGAGTAAGATGAATAAGCATCGAGCAAGCTTCAGGGATCTTCAAATGTTACCTTTCTGTTGGCCTGTATTTTATATTCCTGGTCTACTTCACACGAAACGATAACCAGAGCAGAGCAGAGCAAAGCGAAGGAAGGAAGGAAATGGCTTCTGCTACACCAGCGATTGTGCTCCGCACTCCCTCATTCTCCTCCCGCGGGAGTTCCTTCAACGGGACAGCTCTACCCGCCGCATACGTCAAGTCTTCGTCCCTCATTCCTTCCAAGAATTCCGTCTCTTGCAGTGCTCTCAAGCCGGCCGACACAGAAATCATAAGGACTCTCGCAACGCGCAGGCAGCTCGCTCTCACGCTGCTCGCTGGAGCAGCAGCCCTCACCAGCAAGGTCTCTCCCGCAGACGCAGCCTACGGCGAAGCTGCGAACGTGTTCGGAGCCCCGAAGAAGAACACCGATTTCATCACCTACAGTGGCGAGGGATTCACCCTACAAATCCCGTCAAAATGGAACCCCAGCAAAGAGAAAGAGTACCCTGGACAGGTACTCAGATACGAGGACAACTCAGACGCAGTCAGCAACGTCTCTGTCATGGTCATTCCCACCGACAAGAAGTCCATCAAGGATTTCGGTCCTCCCGAGGAATTCATTTCACAGGTGGATTTCTTGTTGGGCAAACAGGCATACTCTGGAAAGACACAGTCAGAGGGAGGATTCGATCCTGATGCAGTGGCAATTGCATCCTTACTAGAGGCATCAACCTCTGTTAGCAATGGGAAGGAATATTACAACATTTCTGTATTAACAAGAACAGCCGACGGTGACGAAGGAGGGAAACACCAGTTGATCACTGCAACTGTTAAAGATGGAAAGTTGTACATGTGTAAGGCTCAGGCTGGTGACAAGAGATGGTTTAAAGGAGCAAGGAAATATGTAGAAAGCACTGCTAGCTCCTTCAATGTTGCTTAAATTCCAAGCTTAAAACAATTTTAAGATATGTATGTACTATGTATATGATCATAGCTTTCTTGATGTCTATTTTCCGATGAAATATTTCAATCTTATATTCGGGGTTTTGTAGCTTTGTCGGAAATAGAACAGTATGAAGAGGATTTTTAATTTCGTATCCTTTATGCATTTTGTATTGAACTGCAGTCTGATAATCAAGAAACACTCTCATTATAAAAATAAGAGTGTTTGGAATAACACAAATACCATAAAATGGTAATTGTCTTTTATGACGAGGAATCGTTCAGGAGTGACATGACC

Ace file of the UniGene sp_v2.0_unigene15733 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative endomembrane protein 70 [Arabidopsis thaliana] gb\|AAD20090.1\| putative endosomal protein [Arabidopsis thaliana] gb\|AAL24256.1\| At2g01970/F14H20.4 [Arabidopsis thaliana] dbj\|BAE98629.1\| putative endosomal protein [Arabidopsis thaliana] gb\|AEC05528	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	transmembrane 9 superfamily protein member 1 precursor	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	86%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	86%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Sma3	Aldo/keto reductase	IPR001395	-	-
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Ribosomal protein L1	IPR002143	-	-
Sma3	Photosystem II PsbP, oxygen evolving complex	IPR002683	-	-
Sma3	Nonaspanin (TM9SF)	IPR004240	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	Ribosomal protein L13	IPR005822	-	-
Sma3	Ribosomal protein L13, bacterial-type	IPR005823	-	-
Sma3	Twin-arginine translocation pathway, signal sequence	IPR006311	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Ribosomal protein L1, 2-layer alpha/beta-sandwich	IPR016094	-	-
Sma3	Ribosomal protein L1, 3-layer alpha/beta-sandwich	IPR016095	-	-
Sma3	Mog1/PsbP, alpha/beta/alpha sandwich	IPR016123	-	-
Sma3		IPR017909	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKM1

Fln msg:

Fln protein: MMDRPAMALCVLSILISCSFVLVRSASDHSYKVGDEVPLYVNKVGPFQNPSETYRYFDLPFCTPDHVTEKKEALGEVLNGDRMVDARYRLKFRVDKETNSLCKKKLSKEDLAKFRDAVKNDYYFQMYYDDLPIWGFVGKVENENKGDEKKPRHLLYRHVHFDVLYNDDRVIEISVHTDPQYAVDITEDKEIEVEFMYSVKWKKTDILFERRMDKYAKSSFLPQHLEIHWFSIINSCVTVLLLTGFLATILMRILKNDFIKYSRDEESMDDQEETGWKYIHKSLFSAVLGSGTQLLVLTIFIFVLALVGVFYPYNRGALYTALVVIYALTSGIAGYVAASFYGQLEGRNWVRNLLLTGCLFCGPLFLTFSFLNTVAIAYNATAALPFGTIVVIVLIWTLITFPLLVLGGIAGKNSKAEFQAPCRTTKYPREIPPLPWYRRTVPQMAMAGFLPFSAIYIELYYIFASIWGHKIYTIYSILFIVFIILIIVTSFITIALTYFQLAAEDHEWWWRSVLCGGSTGLFVFGYCFYYYFARSDMTGFMQVSFFFGYMACICYGFFLMLGTVGFQSSLLFVRHIYRSIKCE*

Protein Length: 585

Fln nts: CTAGCTTTTATTGGATTTGGCTTTAGCTCCCACGATATTCACAGTGTCGACG_-_ATGATGGATAGGCCGGCCATGGCTCTGTGTGTGCTTTCAATTCTCATATCATGCAGCTTTGTATTGGTAAGAAGCGCATCGGATCACAGTTATAAAGTGGGAGACGAGGTGCCCCTGTATGTCAACAAGGTCGGCCCCTTTCAGAACCCCAGTGAGACATATCGTTATTTTGATTTGCCATTCTGTACTCCAGATCACGTGACTGAAAAGAAGGAGGCTCTTGGAGAAGTCTTAAATGGTGATCGCATGGTTGATGCTAGGTATCGGTTAAAATTCCGGGTGGACAAAGAGACCAACTCCCTTTGCAAGAAGAAGCTTTCAAAAGAGGATCTAGCAAAGTTCAGGGATGCTGTTAAGAATGATTACTACTTTCAGATGTACTATGATGATCTGCCTATATGGGGCTTTGTTGGAAAGGTTGAAAATGAAAATAAAGGCGATGAGAAGAAGCCCAGGCATTTGCTTTACAGACATGTGCACTTTGATGTCCTATATAACGATGACCGAGTCATAGAAATCAGTGTGCATACAGATCCTCAGTACGCTGTGGATATTACCGAGGACAAAGAGATTGAGGTTGAGTTCATGTACTCTGTTAAGTGGAAAAAAACTGACATCCTCTTTGAACGCCGAATGGATAAATATGCGAAATCTTCATTTTTGCCACAGCACTTGGAAATTCATTGGTTCTCCATTATCAATTCGTGTGTAACTGTTCTTCTCCTGACAGGATTCCTGGCCACAATTCTCATGCGCATTCTGAAGAATGATTTTATCAAATACTCTCGTGATGAGGAGTCAATGGATGATCAAGAGGAGACAGGATGGAAGTACATTCACAAGTCTCTATTTTCTGCTGTTCTTGGCTCTGGAACTCAGCTGTTAGTACTTACTATCTTTATCTTTGTGCTTGCATTGGTGGGTGTTTTCTATCCATACAACAGGGGAGCCCTATATACTGCTCTTGTTGTTATATATGCTCTTACATCTGGCATAGCAGGCTACGTTGCAGCTTCCTTTTATGGTCAACTTGAAGGACGAAATTGGGTAAGGAACCTTTTGCTTACAGGTTGCCTCTTTTGTGGGCCGCTATTCTTAACCTTTTCCTTCCTGAACACAGTTGCAATAGCATACAATGCCACAGCAGCCTTGCCATTTGGTACTATTGTTGTGATTGTTCTCATCTGGACACTAATCACCTTTCCTTTGCTCGTGTTGGGCGGCATAGCTGGTAAGAACAGCAAGGCAGAGTTTCAAGCTCCATGCCGTACCACAAAGTATCCCCGGGAGATTCCACCATTACCATGGTACAGGAGGACCGTTCCTCAAATGGCAATGGCAGGCTTTTTGCCATTTAGTGCCATTTATATTGAGCTATATTACATTTTTGCAAGTATCTGGGGTCACAAGATTTATACAATATATAGCATTCTCTTCATTGTATTCATCATCCTCATCATTGTTACCTCGTTTATTACAATTGCATTAACATACTTTCAGCTTGCAGCAGAGGATCATGAATGGTGGTGGAGGTCTGTTTTATGTGGAGGATCAACTGGTTTGTTCGTGTTTGGATACTGTTTCTATTATTACTTTGCACGATCTGATATGACTGGCTTCATGCAAGTGTCATTCTTCTTTGGATACATGGCTTGCATATGTTATGGCTTCTTCCTAATGCTGGGAACAGTTGGATTCCAGTCTTCTTTACTGTTTGTTCGCCATATATACCGTTCCATTAAGTGTGAGTAA___AACTCTTCCAGTGCAGAGCACGCAGATTTTGGTCTATCTGTCCATCCTGTAGATTAGTTGCAGATTATAATGGTGCTGGCTAGCATACTCCTTTGAACATGCTTGTCCAAAATGGAGTTGGGCGGTAAGCTCTTACCGTTAGGTGAATGCTTACATGTGGTAAGTTTCTAGGAAATAAGGTGAATAATGACACTGGCAGATTAGGCTGAGGTGAACAATTGAAGAACTAGTATATAGTTATGTTGATGAATAGTTACGGAGGCATGTTTTATCTCGAACAGCTTTGTTTGGTGATACCTATTGTCAGGCATAAGCCAATTTTTTTAGGTCTCAAATCTATGGAGTAAGATGAATAAGCATCGAGCAAGCTTCAGGGATCTTCAAATGTTACCTTTCTGTTGGCCTGTATTTTATATTCCTGGTCTACTTCACACGAAACGATAACCAGAGCAGAGCAGAGCAAAGCGAAGGAAGGAAGGAAATGGCTTCTGCTACACCAGCGATTGTGCTCCGCACTCCCTCATTCTCCTCCCGCGGGAGTTCCTTCAACGGGACAGCTCTACCCGCCGCATACGTCAAGTCTTCGTCCCTCATTCCTTCCAAGAATTCCGTCTCTTGCAGTGCTCTCAAGCCGGCCGACACAGAAATCATAAGGACTCTCGCAACGCGCAGGCAGCTCGCTCTCACGCTGCTCGCTGGAGCAGCAGCCCTCACCAGCAAGGTCTCTCCCGCAGACGCAGCCTACGGCGAAGCTGCGAACGTGTTCGGAGCCCCGAAGAAGAACACCGATTTCATCACCTACAGTGGCGAGGGATTCACCCTACAAATCCCGTCAAAATGGAACCCCAGCAAAGAGAAAGAGTACCCTGGACAGGTACTCAGATACGAGGACAACTCAGACGCAGTCAGCAACGTCTCTGTCATGGTCATTCCCACCGACAAGAAGTCCATCAAGGATTTCGGTCCTCCCGAGGAATTCATTTCACAGGTGGATTTCTTGTTGGGCAAACAGGCATACTCTGGAAAGACACAGTCAGAGGGAGGATTCGATCCTGATGCAGTGGCAATTGCATCCTTACTAGAGGCATCAACCTCTGTTAGCAATGGGAAGGAATATTACAACATTTCTGTATTAACAAGAACAGCCGACGGTGACGAAGGAGGGAAACACCAGTTGATCACTGCAACTGTTAAAGATGGAAAGTTGTACATGTGTAAGGCTCAGGCTGGTGACAAGAGATGGTTTAAAGGAGCAAGGAAATATGTAGAAAGCACTGCTAGCTCCTTCAATGTTGCTTAAATTCCAAGCTTAAAACAATTTTAAGATATGTATGTACTATGTATATGATCATAGCTTTCTTGATGTCTATTTTCCGATGAAATATTTCAATCTTATATTCGGGGTTTTGTAGCTTTGTCGGAAATAGAACAGTATGAAGAGGATTTTTAATTTCGTATCCTTTATGCATTTTGTATTGAACTGCAGTCTGATAATCAAGAAACACTCTCATTATAAAAATAAGAGTGTTTGGAATAACACAAATACCATAAAATGGTAATTGTCTTTTATGACGAGGAATCGTTCAGGAGTGACATGACC

Fln Alignment:

Contig15733___SDHSYKVGDEVPLYVNKVGPFQNPSETYRYFDLPFCTPDHVTEKKEALGEVLNGDRMVDARYRLKFRVDKETNSLCKKKLSKEDLAKFRDAVKNDYYFQMYYDDLPIWGFVGKVENENKGDEKKPRHLLYRHVHFDVLYNDDRVIEISVHTDPQYAVDITEDKEIEVEFMYSVKWKKTDILFERRMDKYAKSSFLPQHLEIHWFSIINSCVTVLLLTGFLATILMRILKNDFIKYSRDEESMDDQEETGWKYIH---------KSLFSAVLGSGTQLLVLTIFIFVLALVGVFYPYNRGALYTALVVIYALTSGIAGYVAASFYGQLEGRNWVRNLLLTGCLFCGPLFLTFSFLNTVAIAYNATAALPFGXXXXXXXXXXXXTFPLLVLGGIAGKNSKAEFQAPCRTTKYPREIPPLPWYRRTVPQMAMAGFLPFSAIYIELYYIFASIWGHKIYTIYXXXXXXXXXXXXXXXXXXIALTYFQLAAEDHEWWWRSVLCGGSTGLFVFGYCFYYYFARSDMTGFMQVSFFFGYMACICYGFFLMLGTVGFQSSLLFVRHIYRSIKCE
B8LKM1_______________SDHKYSKGDHVPLYANKVGPFQNPSETYRYFDLPFCQPEHMTEKREDLGEVLNGDRMVDAQYKLDFNVDKESEVLCKKKFKAEDVAKFREAVKNSYYFQMYYDDLPLWGFIGKVEKESKIDQK---YSLFTHLHFDIKFNKDRVIEISVRTDPSFTVDITEDKEVEIEFVYSVKWAETDVPFKRRMDVYSKSSSLPQHLEIHWFSIINSCVTVLLLTGFLATILMRVLKNDFIKYSHDEETADEQEETGWKYIHGDVFRYPPHKSLFSAVLGSGTQLLALAIFIFMLALVGVFYPYNRGALYTALVVIYALTSGIAGYTAASFYRQLEGTNWVRNLLLTGCLFCGPLFLTFCFLNTVAIAYNATAALPFGTILVILLIWTLVTSPLLVLGGIAGKNSRAEFQAPCRTTKYPREIPPLPWYRGTVPQMAMAGFLPFSAIYIELYYIFASLWGHKIYTIYSILFIVFIILIIVTAFITIALTYFQLAVEDHQWWWRSVLCGGSTGVFIFGYCVYYYFARSDMTGFMQTSFFFGYMTCICYGFFLMLGTVGFRASLLFVRHIYRSIKCE

SNPs (tot: 57)

Position	A %	C %	G %	T %	Probability
614		5		94	0.997984
960		3		96	0.999999
990		97		2	0.907451
1068	10		89		1.0
1129		3		96	0.991825
1133		1		94	0.964041
1137	4			95	0.995482
1142		14		85	1.0
1143		85		14	1.0
1147		5		95	0.997749
1149		9		90	0.999872
1156		10	89		0.999919
1157		10		89	0.999919
1163		11		88	0.999937
1166		64	35		1.0
1174	10		90		0.90298
1175	10			90	0.90298
1519	20			80	0.995493
1520	80	20			0.995493
1521			80	20	0.995493
1522		80	20		0.995493
1567	20		80		0.995493
1720	94		5		0.998578
1735	94	5			0.998894
1779	6	93			0.999453
1789	92			7	0.999602
1795		92	7		0.999602
1830		93	6		0.999453
1832			6	86	0.995852
1833		6		93	0.999453
1834		89	6		0.998304
1840		92	7		0.999602
1842		7	3	85	0.997433
1843	11	88			1.0
1844	9			87	1.0
1846		90	10		1.0
1851	90	10			1.0
1853	6	93			0.999364
1854		6		90	0.997952
1910			7	92	0.999532
1997	90	10			0.90298
1998	90	10			0.90298
2103		75	25		1.0
2104	25			75	1.0
2105		75	25		1.0
2108	25	75			1.0
2111	25			75	1.0
2114		25		75	1.0
2115	25		75		1.0
2116	25			75	1.0
2117			25	75	1.0
2118		75	25		1.0
2120		25		75	1.0
2123		75	25		1.0
2139	87			12	0.992554
2140		87		12	0.992554
2479	85	14			0.993533

SSRs (tot: 2)

Start position	End position	Sequence	Length
1120	1134	TTCC TTCC TTCC TTC	15
1139	1155	TGCTC TGCTC TGCTC TG	17

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain