SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene15655

Length: 1475 nt

Origin of reads: Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene15655

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Peptidyl-prolyl cis-trans isomerase CYP40 [Arabidopsis thaliana] sp\|Q9C566.1\|CYP40_ARATH RecName: Full=Peptidyl-prolyl cis-trans isomerase CYP40; Short=PPIase CYP40; AltName: Full=Cyclophilin of 40 kDa; Short=Cyclophilin-40; AltName: Full=Protein SQUINT;	-	-	64%
FL-Next	sp=Peptidyl-prolyl cis-trans isomerase CYP40; Arabidopsis thaliana (Mouse-ear cress).	-	-	78%
Blast2go	peptidyl-prolyl cis-trans isomerase cyp40	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	floral meristem determinacy	GO:0010582	Biological Process	80%
Blast2go	vegetative phase change	GO:0010050	Biological Process	80%
Blast2go	cytoplasm	GO:0005737	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain	IPR001179	-	-
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain	IPR002130	-	-
Sma3	CS-like domain	IPR007052	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	CS domain	IPR017447	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9C566

Fln msg: Separated hits, possible frame ERROR between 427 and 429,

Fln protein: MRCYLDISIGGELEGRIVVELYADIVPKTAENFRALCTGEKGIGAHTGAPLHYKGVPFHLVTKGFMIQGGDISAHNGKGGESIYGLNFEDENFLKKHQRKGMLSMxxNSGPNTNGSQFFITMARTSHLDGKHVVFGKVIKGRGVIRAIEQSPVGNNDCPLNDVIIADCGEIPEGADDGVLNFFKDGDKYLDWPLDLDEKPSELSWWIAAVESAKSFGNENFKNGNYKMALRKYRKAMYYLDNCWDSEELDEDKSHRLRKIKSQILTNSSVCKLRLGDAEGALVDIEHAIQTGEDNTKAFFRQGQAHMALNDVEAAVLSFTKALEFAPNDVAIKKEMAAAKKKIAEKREQERKAFSRLFQ*

Protein Length: 361

Fln nts: CATGGCCTGGTAATGAAGGTGACTTGGTGGAGTATGACACTCGTATGGCTATATAAAGATATCCTGGTACGTGGGTTCAAGGAGTTTAAGGGCCTTCTTCTCTTCAGAA_-_ATGAGGTGCTATTTAGATATAAGTATTGGAGGAGAGTTAGAGGGGAGGATTGTGGTGGAACTTTATGCAGACATAGTGCCAAAGACTGCCGAGAATTTCAGGGCGCTGTGTACGGGAGAGAAAGGAATAGGCGCTCATACTGGTGCTCCTCTTCATTACAAAGGAGTCCCCTTTCATCTTGTGACGAAAGGTTTTATGATACAAGGGGGAGACATTTCTGCTCATAATGGTAAAGGTGGGGAGTCGATTTATGGATTGAATTTTGAGGATGAAAATTTTCTCAAGAAGCACCAACGGAAAGGTATGTTGTCAATGGCxxxCAACTCTGGACCTAATACGAATGGGTCGCAGTTTTTTATCACTATGGCAAGGACCTCTCATCTGGATGGAAAACATGTGGTATTTGGAAAGGTAATAAAAGGTAGAGGAGTTATAAGGGCAATTGAGCAGAGCCCTGTTGGCAACAATGATTGTCCCTTGAATGATGTTATAATTGCAGACTGTGGCGAGATACCAGAAGGTGCAGACGATGGTGTTCTTAACTTCTTTAAAGATGGAGACAAATACCTAGATTGGCCACTTGATTTGGATGAGAAACCTTCAGAGCTGTCGTGGTGGATAGCTGCAGTGGAGTCCGCTAAAAGTTTTGGAAATGAAAATTTCAAGAATGGGAATTACAAGATGGCATTAAGAAAATACAGGAAGGCTATGTACTATCTTGATAATTGTTGGGACAGTGAAGAGCTTGATGAGGATAAAAGCCACCGGTTACGGAAGATAAAGTCACAAATCCTGACAAATAGTTCTGTTTGCAAGTTAAGATTAGGAGATGCCGAGGGAGCTCTAGTGGATATTGAGCATGCAATTCAGACTGGTGAGGATAATACCAAAGCTTTCTTTCGTCAGGGTCAGGCACATATGGCCCTGAATGATGTGGAGGCTGCTGTTTTAAGCTTTACAAAAGCTCTTGAATTTGCACCCAATGATGTGGCAATAAAGAAGGAGATGGCAGCTGCAAAGAAGAAAATTGCTGAGAAGCGTGAACAGGAGCGCAAAGCTTTTTCTAGGTTGTTCCAGTGA___CTGATTTTCAATTATGGTTCAAGGATAGCAGAGGTAAGTCAGCAGGAGTTGCTTCGTTGTTCTTCTACTGAATCTTTAAGCAGTCTTTGTGGAaTGGACAGCATGATTTTTTGTAAAAAAGACTAGTAATATCCTAAACTTGAAACTAGTTCCAGTCATAAGAAAAAGAACACATTATAATTTTGTTGATGAGCTGATGAAGCCTAATGGCAAATGCAATAATGAAATCTAAAAAATGCGAGCAAGAACGCATTGTCAGATATTAGAAGGATGTTGACATGGATTTAT

Fln Alignment:

Contig15655___RCYLDISIGGELEGRIVVELYADIVPKTAENFRALCTGEKGIGAHTGAPLHYKGVPFHLVTKGFMIQGGDISAHNGKGGESIYGLNFEDENFLKKHQRKGMLSMAxNSGPNTNGSQFFITMARTSHLDGKHVVFGKVIKGRGVIRAIEQSPVGNNDCPLNDVIIADCGEIPEGADDGVLNFFKDGDKYLDWPLDLDEKPSELSWWIAAVESAKSFGNENFKNGNYKMALRKYRKAMYYLDNCWDSEELDEDKSHRLRKIKSQILTNSSVCKLRLGDAEGALVDIEHAIQTGEDNTKAFFRQGQAHMALNDVEAAVLSFTKALEFAPND
Q9C566_______________KCFMDISIGGELEGRIVIELYDDVVPKTAENFRLLCTGEKGLGPNTGVPLHYKGNRFHRVIKGFMIQGGDISANDGTGGESIYGLKFDDENFELKHERKGMLSMAxNSGPNTNGSQFFITTTRTSHLDGKHVVFGRVTKGMGVVRSIEHVSIEEQSCPSQDVVIHDCGEIPEGADDGICDFFKDGDVYPDWPIDLNESPAELSWWMETVDFVKAHGNEHFKKQDYKMALRKYRKALRYLDICWEKEGIDEETSTALRKTKSQIFTNSAACKLKFGDAKGALLDTEFAMRDEDNNVKALFRQGQAYMALNNVDAAAESLEKALQFEPND

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
961		20		80	0.995493
979	10	90			0.90298
1085	87		12		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain