SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene15610

Length: 474 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene15610
TGGAAGTCTGCGCTCTGGTATTGGCGTCGTGACCTTGGCTGTCACTCCGCTATTACATCCGGCAAAGGATTCGGAGCAACCATTCAAGCAATCAACGGAGCAATAGAATGCAACGGTGGAAACACAGACGAAGTGAATGACCGCGTTAGTTATTACACCAAATACTGTAGTCAATTCGGTGTAGATCCAGGAAGCAACCTTAGCTGTTAAGACTAATTGGTGCTCGAGCCTCTTGATTTCCATCCAGGGAGTTCAAATATGACAAATGAAATACTGTAGTCAATTCAGTGTAGATCCAGGAAGCAACCTTAGCTGTTAAGACTATTTGGTGCTCCAGCCTCTTGGTCTCATCCAGGAAGTTCAAATATGACAAATGTTCGATAGCACTCAATAAAGTGATAGAGGCTAAAAATCATTGTAGTATTACCTGTGTTTGACAAAATAGTGAAATTAAATAAAGGACGTTTGTTATTG

Ace file of the UniGene sp_v2.0_unigene15610

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Class II chitinase 2-2 n=1 Tax=Pseudotsuga menziesii RepID=D7P705_PSEMZ	-	-	5.0e-29	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Blast2go	class vii chitinase	-	-	4.62911e-36	86%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Glycoside hydrolase, family 19, catalytic	IPR000726	-	-
Sma3	Chitin-binding, type 1	IPR001002	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Glycoside hydrolase, family 19	IPR016283	-	-
Sma3	Chitin-binding, type 1, conserved site	IPR018371	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NRW0

Fln msg: your sequence is shorter than subject: 70 - 230

Fln protein: WKSALWYWRRDLGCHSAITSGKGFGATIQAINGAIECNGGNTDEVNDRVSYYTKYCSQFGVDPGSNLSC*

Protein Length: 71

Fln nts: TGGAAGTCTGCGCTCTGGTATTGGCGTCGTGACCTTGGCTGTCACTCCGCTATTACATCCGGCAAAGGATTCGGAGCAACCATTCAAGCAATCAACGGAGCAATAGAATGCAACGGTGGAAACACAGACGAAGTGAATGACCGCGTTAGTTATTACACCAAATACTGTAGTCAATTCGGTGTAGATCCAGGAAGCAACCTTAGCTGTTAA___GACTAATTGGTGCTCGAGCCTCTTGATTTCCATCCAGGGAGTTCAAATATGACAAATGAAATACTGTAGTCAATTCAGTGTAGATCCAGGAAGCAACCTTAGCTGTTAAGACTATTTGGTGCTCCAGCCTCTTGGTCTCATCCAGGAAGTTCAAATATGACAAATGTTCGATAGCACTCAATAAAGTGATAGAGGCTAAAAATCATTGTAGTATTACCTGTGTTTGACAAAATAGTGAAATTAAATAAAGGACGTTTGTTATTG

Fln Alignment:

Contig15610___WKSALWYWRRDLGCHSAITSGKGFGATIQAINGAIECNGGNTDEVNDRVSYYTKYCSQFGVDPGSNLSC
A9NRW0_______________WKTALWFWNVNSNCHTAITSGQGFGATIQAINGAIECNGGNTDQVNDRISRYTNYCSQFGVDPGSNLSC

SNPs (tot: 3)

Position	C %	T %	Probability
147	75	24	1.0
217	18	81	1.0
297	80	19	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain