SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene15577

Length: 990 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene15577 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Tau class glutathione S-transferase n=3 Tax=Pinus RepID=Q4PNY9_PINTB	-	-	81%
FL-Next	tr=Tau class glutathione S-transferase; Pinus tabuliformis (Chinese pine) (Pinus leucosperma).	-	-	81%
Blast2go	tau class glutathione s-transferase	-	-	78%

Source	InterPros	Term	Type	Identity
Sma3	Lipocalin	IPR002345	-	-
Sma3	Glutathione S-transferase, N-terminal	IPR004045	-	-
Sma3	Glutathione S-transferase, C-terminal	IPR004046	-	-
Sma3	Glutathione S-transferase, C-terminal-like	IPR010987	-	-
Sma3		IPR012335	-	-
Sma3	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	-
Sma3	Chromogranin, conserved site	IPR018054	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q4PNY9

Fln msg:

Fln protein: MATEGEEEQVKLLGVTLSPFVVRVRIALALKGIDYEFIQETMQPKSELLLKSNPVHKKIPVLIHNGKPVCESTVIVQYIEEAWGGKAPNLMPKDPYDRAVARFWAAFVDDKIFPSMRGVFLGQGEQLQKAVEESVTNLLLIEEALRTNQCFAGKAYFGGDQIGLVDIALGGLSAFIKGLEKATDSVLIDPEKMPLLSAWMDRFCKSDGVREVMPDFAKQAEFMSTRRASMISPPTAK*

Protein Length: 239

Fln nts: ATGGGATATGAGAGAAAGAAGAGGCAGACACATAAAATTCGAAATACATTTCGAGTGCA_-_ATGGCGACAGAGGGAGAAGAGGAGCAAGTAAAGCTGTTAGGTGTGACTCTGAGTCCCTTCGTGGTGAGGGTTCGCATAGCACTTGCTCTTAAAGGTATCGATTACGAGTTCATCCAAGAGACTATGCAGCCTAAGAGCGAGCTGCTGCTGAAATCAAACCCCGTTCACAAGAAAATTCCAGTGCTTATCCACAATGGAAAACCTGTTTGTGAATCCACGGTTATTGTGCAATATATTGAGGAGGCATGGGGAGGTAAGGCACCCAATCTTATGCCGAAAGATCCATATGACCGAGCCGTTGCTCGCTTCTGGGCTGCCTTTGTAGACGATAAGATCTTTCCATCCATGCGAGGAGTGTTTTTGGGCCAAGGCGAGCAGCTACAGAAAGCAGTGGAAGAGAGCGTTACCAACCTTCTTTTGATAGAGGAAGCTCTGCGAACCAACCAGTGCTTCGCAGGAAAAGCGTACTTTGGAGGAGATCAGATTGGCTTGGTTGACATCGCATTGGGTGGTTTGTCGGCCTTTATCAAAGGCCTCGAGAAGGCTACCGATAGCGTTTTAATAGATCCAGAGAAAATGCCATTGTTGAGCGCGTGGATGGATCGATTCTGTAAATCCGATGGAGTGAGAGAAGTGATGCCTGATTTTGCCAAGCAGGCGGAATTTATGTCCACTAGGAGAGCCAGTATGATATCACCGCCTACAGCTAAATAG___GGCAAACCATGCCGGCCTTATAAATTTAGCACAGACAAAGGTTATATTTGTTAAAATAAGTTAAATTTAGGTAGGCGATTCAAGTTAAATTTAGGGATTCTAGTGTGTACTTGCATATCAAGTTATTTCAATATTTAAATATTTTTATGTGTGGGTTGTAATCATCAAATTTTGTGTGATTAATAGAAAAGACGTAACTCCAATGTTTTGTAGTAGT

Fln Alignment:

Contig15577___MATEGEEEQVKLLGVTLSPFVVRVRIALALKGIDYEFIQETMQPKSELLLKSNPVHKKIPVLIHNGKPVCESTVIVQYIEEAWGGKAPNLMPKDPYDRAVARFWAAFVDDKIFPSMRGVFLGQGEQLQKAVEESVTNLLLIEEALRTNQCFAGKAYFGGDQIGLVDIALGGLSAFIKGLEKATDSVLIDPEKMPLLSAWMDRFCKSDGVREVMPDFAKQAEFMSTRRASMISPPT
Q4PNY9_______________MAREGEKGQVKLLGATLSPFVVRVRIALALKGIDYEFIQEDLETKSELLLQSNPVYKQIPVLVHNGKPVCESMIIVQYIEEAWDNKAPNLMPKDPYDRAIARFWAAFIDDKLFPSTRAVFTGQGEQLQKAVEDSVTNFLLIEEALRTNRCFAGKAYFGGDEIGLIDIALGGMSTFIKALEKATNTILIDPKKMPLLTAWMDRFCKSDGVKEVMPDPVKHAEYLCARRASMISPPT

SNPs (tot: 42)

Position	A %	C %	G %	T %	Probability
225	22		77		1.0
322	88	11			0.992527
323		11	88		0.992527
325	88			11	0.992527
397			85	14	0.994477
399	14	85			0.994477
400		85	14		0.994477
402			14	85	0.994477
403	14			85	0.994477
404		14	85		0.994477
406			14	85	0.994477
407	85	14			0.994477
417	87		12		0.993502
423		85	14		0.994477
424		85		14	0.994477
425		85	14		0.994477
427	85	14			0.994477
428	14			85	0.994477
431		14	85		0.994477
433	14			85	0.994477
435			14	85	0.994477
438	71		14		0.988635
439		85		14	0.994477
440		71	28		1.0
442	85	14			0.994477
448			16	83	0.995451
449		83	16		0.995451
451		25	75		0.996473
453		25		75	0.996473
454		75	25		0.996473
455	25			75	0.996473
457		75	25		0.996473
574	33		33		0.997753
611	33		66		1.0
804		66		33	0.997452
838		66	33		0.997452
874	33		66		0.997452
891	33	66			0.997452
900	33		66		0.997452
915		66		33	0.997452
926	33		66		0.997452
958			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain