SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene15573

Length: 1116 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene15573

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Carbonic anhydrase n=2 Tax=Picea sitchensis RepID=A9NNY0_PICSI	-	-	84%
FL-Next	sp=Carbonic anhydrase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	carbonic anhydrase	-	-	75%

Source	InterPros	Term	Type	e value	Identity
Sma3	Carbonic anhydrase	IPR001765	-	0.0	-
Sma3	Carbonic anhydrase, prokaryotic-like, conserved site	IPR015892	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNY0

Fln msg:

Fln protein: MASSSNSYNEAVDLLNKLLSQSPDLYSVAAKKIQEITDELRQQVAAEDVTQKLDEVVVDPVQKLKNGFCHFRKEVYLKDADLFSKLSKGQSPKFMVFACSDSRVCPSHVLNFNLGEAFVVRNIANMVAPYEKNEYPATSAAVEYAVLHLKVEHIIVMGHSCCGGIKALMSMPDDGTTQTAFIEDWMKIGKEARSNVKKLQGSLPFDQQCSVCEKEAVNVSLTNLLTFPFVRDAVLKGTLALHGGYYNFVDGTFKRWSFTYSITQEEALE*

Protein Length: 271

Fln nts: ATGGGTGGACGCATGGTCCATGGCGCATTACGGGCTTCATAATCCCACAATTTCAGCAACTATTTAAATACCCCATCCTCACTCTAAATTCGCCATTCACCTCCTCAATTCCCTTCACCAACGGCTGCCCTCCTCAGATCAATCA_-_ATGGCTTCAAGCAGCAATTCTTACAATGAAGCCGTGGATCTTCTCAATAAATTATTGAGTCAATCCCCGGATCTGTATTCTGTCGCTGCTAAGAAAATCCAGGAAATCACCGATGAATTGCGACAACAGGTTGCAGCGGAAGACGTGACCCAGAAATTGGATGAGGTGGTCGTGGATCCAGTCCAGAAGCTCAAAAATGGATTCTGCCACTTTAGAAAAGAGGTTTACCTAAAAGACGCGGATTTGTTCTCCAAATTGTCCAAGGGCCAGTCTCCCAAGTTCATGGTGTTTGCCTGTTCGGATTCGCGAGTATGCCCTTCACATGTTCTCAATTTCAATCTGGGGGAGGCCTTCGTGGTGCGCAACATTGCCAACATGGTCGCGCCTTACGAGAAGAATGAATATCCAGCAACGAGTGCTGCCGTAGAATATGCCGTTCTGCATCTCAAGGTGGAGCATATAATTGTGATGGGCCACAGCTGTTGCGGAGGAATCAAGGCGCTCATGTCGATGCCAGACGACGGTACCACACAAACGGCTTTCATTGAAGATTGGATGAAGATCGGAAAAGAGGCAAGGTCAAACGTTAAGAAATTGCAGGGCAGCTTGCCGTTTGACCAACAGTGTTCTGTGTGTGAAAAGGAAGCGGTGAACGTGTCACTGACCAATCTGCTGACGTTTCCATTTGTGAGAGACGCAGTTTTAAAAGGCACTTTGGCTTTACACGGTGGATATTACAATTTTGTAGATGGAACATTCAAAAGATGGTCCTTCACTTATTCCATCACACAAGAAGAGGCTCTGGAATGA___CCATCTAATAATCTTCTTCTTTCTTACAACTACTCTCTCTTTGCTTGCCATCACTCTTCCTAATAATGTTGTTTCTTCTTACAACTACTCTCTCTTATTTATTTTATTTCTTAATTATTATGTTTactgaGTGGTTATATTGGTATTATCTCATTATTAAA

Fln Alignment:

Contig15573___YNEAVDLLNKLLSQSPDLYSVAAKKIQEITDELRQQVA--AEDVTQKL-DEVVVDPVQKLKNGFCHFRKEVYLKDADLFSKLSKGQSPKFMVFACSDSRVCPSHVLNFNLGEAFVVRNIANMVAPYEKNEYPATSAAVEYAVLHLKVEHIIVMGHSCCGGIKALMSMPDDGTTQTAFIEDWMKIGKEARSNVKKLQGSLPFDQQCSVCEKEAVNVSLTNLLTFPFVRDAVLKGTLALHGGYYNFVDGTFKRWSFTYSITQEEALE
A9NNY0_______________YNEAVARLNKLLKQSPNLLSAAAKKIEEITDKLQQQVAVAAEDVTQKLANELVIDPVQKLKNGFRNFKSQVYQKDTDLFSKLSKGQSPKFMVFACSDSRVCPSHVLKFNLGEAFVVRNIANMVAPYEKNEYPGTSAAVEYAVLHLKVEHILVMGHSCCGGIKALMSMPDDGVTQTAFIESWIKIGKEARSNVKNSHGDLPFDQQCTACEKEAVNVSLTNLLTFPFVREGVLKGTLALHGGHYNFVDGTFSVWSFNYSITQEESLE

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
628		11		88	0.923564
646	14		85		0.993533
647		85		14	0.993533
656	83	16			0.994512
657		16		83	0.994512
658	16		83		0.994512
659		83	16		0.994512
660	25	75			0.996473
661	75	25			0.996473
666	66		33		0.997452
667		66		33	0.997452
694	66		33		0.997452
940	68		31		1.0
1040	22	77			0.999999
1041	22			77	0.999999
1043	14	85			0.993533
1044	14			85	0.993533
1077	33			66	0.997452
1078	33		66		0.997452
1079	33			66	0.997452
1082	66	33			0.997452
1083	33			66	0.997452
1084	33			66	0.997452
1085		33		66	0.997452
1086	33	33	33		0.997753
1087		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain