SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene15468

Length: 1162 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene15468

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Rhicadhesin receptor precursor, putative (EC:1.15.1.1)	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	germin-like protein subfamily 3 member 2-like	-	-	71%

Source	InterPros	Term	Type	Identity
Sma3	Cupin 1	IPR006045	-	-
Sma3	Germin	IPR001929	-	-
Sma3	Germin, manganese binding site	IPR019780	-	-
Sma3	RmlC-like jelly roll fold	IPR014710	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNR8

Fln msg:

Fln protein: MAGICQMGHLRYLATVVVVVVISMFSNADPDPLQDLCVGDLKSADTQTVHLNGLICKDPDNVTVDDFVYEGIKRPGNASATGFAGTSVTALQFAGLNTLGMSLVRADFEPGGVNVPHLHPRATEIGYVVEGTLYSGFVTTQNKLYAKILSKGDVMVFPRGLVHFQMNVGKSPAVIVGTFNSQNPGTERLPFTLFGSGISDELLQKAFQLSKKEVKSLKAKFGPKV*

Protein Length: 227

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGCAGGGTAGGTAGGTTAGATTTAGTGCAGTGACGCATGATTAGTTATTCTAGGAGTACCCATAATCTAATATGCATGATGGGGTAGTACGAGATCCATAAAATGGCCTTATTGAAGCAATACTTTCACTCCTATTGCAAGCTTCTCAGAAGGACTGCAGTACATCCTCTGAAATTATTTATCTGCCGAAGGCTCCTAGGTCAGATCT_-_ATGGCGGGCATATGCCAAATGGGTCATCTGAGATATCTAGCGACTGTGGTGGTTGTTGTTGTGATCTCAATGTTCTCAAATGCAGACCCTGATCCTTTGCAAGATTTATGTGTGGGAGACCTCAAATCGGCCGATACCCAGACTGTGCATCTCAATGGATTGATCTGTAAGGACCCTGATAATGTCACTGTTGATGACTTTGTCTATGAAGGAATAAAGAGACCAGGCAATGCATCTGCTACTGGATTTGCTGGGACATCTGTGACTGCCCTGCAATTTGCAGGTCTCAACACTCTGGGCATGTCTCTGGTTAGGGCAGATTTTGAACCTGGTGGTGTGAATGTCCCCCACCTGCATCCCAGAGCCACAGAGATTGGGTATGTTGTGGAGGGGACTTTGTATTCTGGGTTTGTCACCACACAGAACAAGCTCTATGCCAAGATTCTCAGCAAGGGCGATGTGATGGTGTTTCCCAGGGGACTGGTGCACTTCCAGATGAATGTGGGAAAAAGCCCTGCTGTTATTGTGGGGACGTTCAATAGCCAGAATCCCGGAACGGAGAGGCTCCCATTCACTCTCTTTGGATCAGGGATCAGTGATGAGCTTCTGCAGAAGGCTTTTCAGCTCAGTAAAAAGGAAGTGAAGTCCTTGAAAGCCAAGTTTGGCCCTAAGGTCTAG___ATTGTATCTCTGCAATTGTTTTTATCTGTTAAAGAGGTAACTTTTTAAAAAAGAATGTGTGAATCTTAGCAGATGCGGCATTTTGCTCCAGGATCGCTCCTGATGTTCTATTCGCAAATATTTAATGTATTTTTCAAGTGTGGCCAGGGAACGAGGCGTTGGTTCAATGGCTATATGCTTGTATTTCATGAATTGGAATAAGTTATATTATTGGAAACAATGCAGCCACTTATTCATGTTTCTCATTCTTCA

Fln Alignment:

Contig15468___MAGICQMGHLRYLATXXXXXXISMFSNADPDPLQDLCVGDLKSADTQTVHLNGLICKDPDNVTVDDFVYEGIKRPGNASATGFAGTSVTALQFAGLNTLGMSLVRADFEPGGVNVPHLHPRATEIGYVVEGTLYSGFVTTQNKLYAKILSKGDVMVFPRGLVHFQMNVGKSPAVIVGTFNSQNPGTERLPFTLFGSGISDELLQKAFQLSKKEVKSLKAKFGPKV
B8LNR8_______________MAGSCQMAHLRYLATVVAVVVISVFSNADPDPLQDFCVGDLRPTNTQTVHLNGLICKNPDNVTVDDFVYEGIKSPGNASATGFAGTSVTALQFAGLNTLGMSLVRADFEPGGVNVPHLHPRATEIGYVVEGTLYSGFVTSQNKLYAKILHKGDVMVFPRGLVHFQMNVGSKPAVIVGTFNSQNPGTERLPFTLFGSGINDELLQKAFQLSKKEVKSLKAKFGPKV

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
361		85	14		0.993533
362			71	28	1.0
363		85		14	0.993533
366	85			14	0.993533
367			14	85	0.993533
371		85		14	0.993533
372	85			14	0.993533
374	85		14		0.993533
380		85		14	0.993533
382		14		85	0.993533
398		30		70	1.0
401	66	33			1.0
402	66		33		1.0
403			66	33	1.0
406		77		22	0.999999
408		66		33	1.0
413	66		33		1.0
414	66	33			1.0
621	90	10			0.90298
622			77	11	0.968132
623		11	77		0.968132
624	11		88		0.923564
935			45	54	1.0
1059	36		63		1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain