SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene15463

Length: 935 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene15463

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	40S ribosomal protein S27-2 n=34 Tax=Embryophyta RepID=RS272_ARATH	-	-	5.0e-31	92%
FL-Next	sp=Ribosomal protein S27; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Blast2go	ribosomal protein s27	-	-	3.66258e-33	99%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular process	GO:0009987	Biological Process	3.66258e-33	99%
Blast2go	cell wall	GO:0005618	Cellular Component	3.66258e-33	99%
Blast2go	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	3.66258e-33	99%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein S27e	IPR000592	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
500		14		85	0.993533
503		14		85	0.993533
507		14		85	0.993533
508		14	85		0.993533
510			85	14	0.993533
518		85		14	0.993533
521	85	14			0.993533
575			10	90	0.90298
577		10		90	0.90298
578		90	10		0.90298
579	90			10	0.90298
580	10		90		0.90298
582	90	10			0.90298
583	90	10			0.90298
584			90	10	0.90298
585	90			10	0.90298
589		10	90		0.90298
595		10	90		0.90298
597		10		90	0.90298
599		10	90		0.90298
600	10	90			0.90298
683			83	16	0.994512
781	83	16			0.994512
828	80			20	0.995493
841		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain