SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene15457

Length: 1047 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene15457 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	40S ribosomal protein S21 n=2 Tax=Picea sitchensis RepID=A9NJY4_PICSI	-	-	2.0e-38	97%
FL-Next	sp=40S ribosomal protein S21; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Blast2go	protein	-	-	0.0	92%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	0.0	92%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein S21e	IPR001931	-	0.0	-
Sma3	Ribosomal protein S21e, conserved site	IPR018279	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 99)

Position	A %	C %	G %	T %	Probability
367	16	33			1.0
368	33	66			1.0
702		2	97		0.999619
720		2	97		0.999119
722	0	2	0	96	0.929064
724	1	2	96		0.937284
726		4		95	1.0
727		3		95	0.999994
728	2	0	96		0.994155
729	96	0		2	0.994155
734		3		96	0.999999
736		2		97	0.999525
738	2	97			0.99955
742	96	2		0	0.996456
744		2	97		0.99964
745	0	2	95	0	0.979082
749	97	2			0.999746
750	1	2	94	0	0.919458
758			96	3	0.999825
759		97	2		0.910981
765	97	2			0.941605
766	1	3	94		0.999726
771	83	14	1		1.0
772	1	12	83		1.0
773		17	82		1.0
774		17	80		1.0
775	12	5		80	1.0
776	4	2		93	0.999352
777	6	1		92	1.0
780	94	1	3		0.924724
782	96	3			0.988113
795		10	89		1.0
796	89	10			1.0
797		10	89		1.0
798	95	4			0.996252
799	88		4	6	0.999989
800	90	4		4	0.953776
801		5		94	0.997984
802	94	5			0.997984
803		5		94	0.998397
805		91		8	1.0
819		5	94		1.0
821	92	5			1.0
823	97	2			0.977151
825	95	4			0.999991
829		3	96		0.988113
831		3	1	94	0.930835
834		42	57		1.0
835	3	1		94	0.951749
837	1	92			0.999986
838	86	11		1	1.0
839	4	94	2		0.967557
841	37	62			1.0
842	93	2		4	0.973796
843	93	2		4	0.979066
844		95	4		0.996599
860	92	2			0.98868
862	2	7		90	0.999998
863	2	4	92		0.98868
864		7		92	0.999999
866	2	2	90		0.965994
901		6	93		0.99903
911	87	6	3		0.993531
912	87	3	3		0.993531
913		9	64	12	1.0
914		10	90		1.0
915	14	3	10	3	1.0
916		18	22		1.0
917	14	3	82		1.0
918	8	91			0.999766
919	54	45			1.0
922		8	91		0.999766
923		8	83	8	0.998844
924	8	91			0.999766
926		8	8	83	0.998844
928	91			8	0.999766
930	8		8	83	0.998844
931	90	9			0.999842
933	9	27		63	1.0
934		9	86	4	0.999642
949			18	81	1.0
951		81	18		1.0
953		12	87		0.999964
955	18			75	1.0
960	78			7	0.999974
961	7	7	23	61	1.0
962		7	23	7	1.0
964		69		30	1.0
965	30		69		1.0
966		23		76	1.0
967			25	75	1.0
977	88		11		0.923564
985	55			44	1.0
993		22	77		0.999999
1007	28		71		1.0
1015		85	14		0.993533
1023		28		71	1.0
1029	50			50	1.0
1030	50		50		1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain