SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene15364

Length: 1158 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene15364 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative acid phosphatase (Fragment) n=1 Tax=Pinus pinaster RepID=Q8RVJ4_PINPS	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Blast2go	acid phosphatase 1	-	-	70%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L10e	IPR001197	-	-
Sma3	Acid phosphatase (Class B)	IPR005519	-	-
Sma3	Acid phosphatase, plant	IPR010028	-	-
Sma3	Vegetative storage protein	IPR011267	-	-
Sma3	Vegetative storage protein/acid phosphatase	IPR014403	-	-
Sma3	Ribosomal protein L10e/L16	IPR016180	-	-
Sma3	Ribosomal protein L10e, conserved site	IPR018255	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AA42

Fln msg:

Fln protein: MAVMLASATMFPFLLFLLHSGAAADGSPKAKLCGRSYSWCPAWRLSVESGNLKDWNTTPLKCVGYVRKYMLAEGQYWEDSKVAALTILDFVKTLKLAGDGMDAWVFDIDETLLSNIPYFQHQDFGGKAFDSKTFKAWVLKMKAPALPSSLLLYNSLLARGFKIFLLTGRDESLRNGTVHNLFQAGYKGWAGLILRGKSDQGTSAGVYKPEKRGELVKKGYRLWGSVGDQWNDLIGPYQASRSFKLPNPMYYVS*

Protein Length: 255

Fln nts: ATGGGGAGTGGGGACTGCGTTGAACAATTTCCATGTTCTTGAAGGTCCTGCGTGGTGTTATATAACACCCTGCTCCTTTCTATGGGGACAAGCTAAGCATCAGATAAACCTTAGTTCCTGCC_-_ATGGCAGTCATGTTAGCATCGGCCACCATGTTCCCCTTTCTTTTGTTCCTCCTGCACAGCGGGGCCGCAGCCGATGGGTCGCCCAAGGCGAAGCTATGCGGCCGTTCTTATTCCTGGTGCCCGGCCTGGAGATTGAGCGTGGAGAGCGGCAACCTTAAAGACTGGAATACCACGCCATTAAAATGCGTCGGCTACGTGAGGAAATATATGTTGGCAGAAGGGCAGTATTGGGAGGATTCCAAAGTAGCAGCGTTAACCATTCTGGATTTTGTCAAAACGCTGAAACTTGCAGGAGATGGGATGGATGCGTGGGTATTTGATATTGATGAAACTCTTCTATCCAATATCCCTTATTTCCAACACCAGGATTTTGGGGGCAAGGCTTTCGATTCGAAGACATTTAAAGCTTGGGTATTAAAGATGAAAGCACCTGCGCTGCCGTCGTCTCTGCTGCTTTATAACAGTTTGTTAGCTCGGGGTTTCAAAATCTTCCTTCTAACTGGCCGAGACGAATCTCTGCGGAATGGAACGGTCCATAATCTGTTCCAGGCCGGTTACAAGGGCTGGGCGGGTCTGATATTGAGGGGGAAGAGCGATCAGGGCACCTCGGCGGGTGTGTACAAGCCCGAGAAGAGGGGAGAACTGGTGAAGAAAGGCTATCGTTTATGGGGAAGTGTGGGTGATCAGTGGAACGATCTGATCGGACCCTACCAGGCATCGCGCTCCTTCAAGCTTCCCAATCCTATGTATTACGTCAGTTGA___AATAGCTTGCAAAGTTTTGTTTCAGGAATGCGAGTTTAACAAATTTCTTCTCCCATCATGTCTGTTGGTAGTAAAAAGTATTGTGTTAGTAGATGGGCTGACCATGTTCATGGTTCTACCCTTCGGGCATGCCTTATTTGTGATCGGTTAACAATGTCACTATCGATGCCAATGTTAGTTTTGGGTTTTCAATCACTCTTTTGTTAATGGCAGGTTTTCTGTTTGTAACAATGGGAAGAAATTATTTGAAAGTGGATATTACTAAATTTTCTCT

Fln Alignment:

Contig15364___MAVMLASATMFPFLLFLLHSG-AAADGSPKAKLCGRSYSWCPAWRLSVESGNLKDWNTTPLKCVGYVRKYMLAEGQYWEDSKVAALTILDFVKTLKLAGDGMDAWVFDIDETLLSNIPYFQHQDFGGKAFDSKTFKAWVLKMKXXXXXXXXXXXXXXXARGFKIFLLTGRDESLRNGTVHNLFQAGYKGWAGLILRGKSDQGTSAGVYKPEKRGELVKKGYRLWGSVGDQWNDLIGPYQASRSFKLPNPMYYVS
D5AA42_______________MAFVLASVAIFPFLLFLLLLGTASANGLSKSKLSGRSASRCEGWRLSVESGNLRDWDVVPSKCVGYVQKYMMTAGQYWEDSKVAVFTILEYVKTLKLVGDGKDAWVFDIDETLLSNIPYYQQHEYGGKAFDSKTFEAWVLEMKSPALPSSLLLYNRLLARGFKIFLLTGRDESQRNGTVHNLFQAGYKGWAGLILRGVNEQGSQASAYKPEKRAELVKKGYRLWGSVGDQWSDLSGPYEASRSFKLPNPMYYIS

SNPs (tot: 5)

Position	C %	G %	T %	Probability
949	25		75	1.0
1039	60		40	1.0
1072	70	20		0.999998
1074	80		20	0.999996
1075	70	20		0.999998

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain