SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene15256

Length: 748 nt

Origin of reads: Biogeco1 v2 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene15256

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QTQ7_ORYSJ	-	-	2.00386e-43	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	37%
Blast2go	retrotransposon unclassified	-	-	0.0	58%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Pyridoxal phosphate-dependent decarboxylase	IPR002129	-	-
Sma3	Ribonuclease H domain	IPR002156	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	-

Full-Lengther Next Prediction

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
252		33		66	0.997452
275	33			66	0.997452
297		33		66	0.997452
312		33		66	0.997452
318	66		33		0.997452
320		66		33	0.997452
324		33		66	0.997452
384	25	75			0.996473
410	75		25		0.996473
413		75		25	0.996473
422	25		75		0.996473
435		25		75	0.996473
439		25		75	0.996473
446		75		25	0.996473
453	25		75		0.996473
468	25		75		0.996473
471		25		75	0.996473
474	25			75	0.996473
486		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain