SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene15254

Length: 691 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene15254

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	myb family transcription factor [Arabidopsis thaliana] dbj\|BAB11531.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAM13187.1\| unknown protein [Arabidopsis thaliana] gb\|AAP13397.1\| At5g05090 [Arabidopsis thaliana] gb\|AED90827.1\| myb family transcrip	-	-	2.0e-12	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Blast2go	myb family transcription factor	-	-	9.99231e-31	65%

Source	InterPros	Term	Type	Identity
Sma3	Myb DNA-binding domain, plants	IPR006447	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-

Full-Lengther Next Prediction

SNPs (tot: 4)

Position	A %	G %	T %	Probability
52	25	75		0.996473
54		25	75	0.996473
56		25	75	0.996473
57		25	75	0.996473

SSRs (tot: 3)

Start position	End position	Sequence	Length
47	62	TTG TTG TTG TTG TTG T	16
450	468	CCTCTG CCTCTG CCTCTG C	19
553	565	GGA GGA GGA GGA G	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain