SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene15210

Length: 832 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene15210 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ABA-responsive LEA-like protein (Fragment) n=19 Tax=Picea RepID=Q3I403_PICGL	-	-	2.0e-08	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Blast2go	aba-responsive lea-like protein	-	-	3.45994e-31	68%

Source	InterPros	Term	Type	e value	Identity
Sma3	Late embryogenesis abundant protein, LEA-5	IPR004926	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
438		70		29	1.0
579	4		96		0.99411
587	92		5	1	0.999986
639	6	93			0.999998
640	4		95		0.994598
644	94	4	2		0.967557
645	94	4			0.967557
646	6	90	2		0.999972
647	2	2	6	90	0.999972
649	92		8		1.0
652		95	4		0.995055
654	91	8			1.0
657	88		11		1.0
659	94		5		0.997984
660	94		5		0.997984
665	10	89			1.0
666	7		89		0.999999
668	94	5			0.997984
673	10	89			1.0
737		10	90		0.999898
738	85	15			1.0
741	15	75	5		1.0
742	5			83	0.999887
743	5	33	50	5	1.0
744	29	52		11	1.0
745	12	43	37		1.0
746	6	43		50	1.0
747	6		37	12	1.0
748	87		12		0.999964
749		43		56	1.0
750	75	25			1.0
751			75	25	1.0
755	75	25			1.0
756			75	25	1.0
758			25	75	1.0
760	75	25			1.0
762			75	25	1.0
763	75	25			1.0
765			75	25	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain