SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene15195

Length: 1410 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene15195 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ACT domain-containing protein [Arabidopsis thaliana] gb\|AEE34879.1\| ACT domain-containing protein [Arabidopsis thaliana]	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	act domain-containing protein	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	response to cytokinin stimulus	GO:0009735	Biological Process	76%
Blast2go	regulation of asymmetric cell division	GO:0009786	Biological Process	76%
Blast2go	lateral root formation	GO:0010311	Biological Process	76%
Blast2go	root cap development	GO:0048829	Biological Process	76%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	76%
Blast2go	protein homodimerization activity	GO:0042803	Molecular Function	76%
Blast2go	endocytic vesicle	GO:0030139	Cellular Component	76%
Blast2go	cell surface	GO:0009986	Cellular Component	76%
Blast2go	plasma membrane	GO:0005886	Cellular Component	76%

Source	InterPros	Term	Type	Identity
Sma3	Amino acid-binding ACT	IPR002912	-	-
Sma3	Protein-PII uridylyltransferase	IPR010043	-	-
Sma3	Hemopexin/matrixin, conserved site	IPR018486	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADB5

Fln msg: Separated hits, possible frame ERROR between 552 and 564, your sequence is shorter than subject: 302 - 439

Fln protein: RRDLGCHSCLVYVTDEDTGAAIEDQQKICKTEELLLNVMRGNSTIREAKTVVSMGFTHTERRLHQLMFADRDYDKLDGTGDRASLSLKDNDNAKPLVTVDNCLERGYSVVTVQCKDRPKLLFDIVCSLTDLEYVVFHATIDSQGPQTCQEYYIRHTDGCPVYSEAEKQRVIQCLEAAIRRRTSxxxxxLELCTNDRVGLLSEVTRIFRENGMSVTKAEVSTRGDKVADVFYVTDAAGNPVDARTVEAVRQEIGLTILQVKDDCMHTKSPPREPAIRFSLGDLFKSQSERFLYSLGLIKSYS*

Protein Length: 303

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTCTTGTATACGTTACTGATGAGGACACAGGTGCGGCCATTGAAGACCAGCAAAAGATTTGTAAAACTGAAGAGCTCTTGTTAAATGTAATGAGAGGAAACAGCACCATCAGAGAAGCTAAAACGGTGGTGTCAATGGGATTCACTCACACAGAAAGGCGGCTTCATCAATTGATGTTTGCTGACCGTGACTATGATAAACTCGATGGAACTGGAGACAGGGCATCTCTTTCTCTCAAGGACAACGACAACGCCAAGCCTCTTGTGACTGTTGACAACTGTTTGGAGAGGGGGTATTCTGTGGTGACTGTTCAGTGTAAAGATAGACCTAAGCTTCTCTTTGATATTGTATGCAGCTTGACAGATCTGGAGTATGTTGTCTTTCATGCCACTATAGACTCTCAAGGCCCACAAACTTGTCAGGAGTACTACATCAGGCATACTGATGGTTGCCCCGTGTATTCAGAAGCAGAGAAGCAGCGTGTGATTCAGTGTCTGGAGGCTGCCATTAGACGAAGAACATCAGAxxxxxxxxxxxxACTGGAACTCTGCACCAACGACCGTGTTGGGCTTCTGTCGGAGGTGACTCGCATATTTAGAGAAAATGGGATGTCAGTTACAAAAGCAGAGGTGTCAACGCGGGGTGATAAGGTAGCTGATGTGTTCTATGTGACTGATGCAGCTGGAAACCCCGTTGATGCCAGGACAGTAGAAGCTGTTCGCCAAGAAATTGGACTAACAATCTTGCAAGTAAAAGACGATTGTATGCATACAAAATCTCCTCCAAGGGAACCTGCGATCCGATTCTCCCTTGGTGATCTCTTCAAATCACAGTCAGAGCGTTTTCTCTACAGTCTTGGATTGATAAAATCCTATTCTTAGATGTTGTATTTTGGGCCTCTTGCAATGGAATTAAGTAATCGCCTTTGGAGGTTGTATGTGTGGACGATGGTTCTCTAAAAATCATCGTCGTTCATCTGTTTTCCACTGTTACAATTACCTTGCTAAAGACAGAAATTGGTGTGATTCCGACATACTTCAGACTGAAATTCTCTAAGATATTGGTACAGCAATGCCAGGATCTGGAAAGCACAATACCACTGGGATTTGCCAAATATGATTGGTTGATCATCGAACAGAAGACCAGCAATGGAGAACTATTCACCACACTGGCCGAACATGGCCCTGTCATTTGATGACCCAGGAATTGCGAAATTGACCTCATCATAGAGAAGTATGCAAAATTGTAGAACTGAAAGACCGCGCTAATTACAGTGGTGGTAGGAGAAAGGAACTAAATCCACCTAATCTAGAATTGCTTATACAAGTTGTACAAATAACAAGCTGATAAATAGTCTTTGTCTACAGAATGACAACTCTTCAAACT

Fln Alignment:

Contig15195___SCLVYVTDEDTGAAIEDQQKICKTEELLLNVMRGNSTIREAKTVVSMGFTHTERRLHQLMFADRDYDKLDGTGDRASLSLKDNDNAKPLVTVDNCLERGYSVVTVQCKDRPKLLFDIVCSLTDLEYVVFHATIDSQGPQTCQEYYIRHTDGCPVYSEAEKQRVIQCLEAAIRRRTSExxxxLELCTNDRVGLLSEVTRIFRENGMSVTKAEVSTRGDKVADVFYVTDAAGNPVDARTVEAVRQEIGLTILQVKDDCMHTKSPPREPAIRFSLGDLFKSQSERFLYSLGLIKSYS
D5ADB5_______________ACLVYVTDEETGAPIDDGQKICKIEELLRNVMRGNSNIRGAKTVASMGLTHTERRLHQLMFADRDYEKLDGTVGRAPPPLNDNDNAKPHVTVENCLERGYSVVNVQCKDRPKLLFDVVCTLTDMEYVVFHATIDSQGPQTHQEYYIRHTDGCPVNSEAERQRVIQCLEAAIRRRASExxxxLELCTNDRVGLLSDVTRIFRENGMSVTRAEVSTRGDKAVNVFYVTDAAGNPVDPKTVEAVRREIGLTILQVKDNCMDTKSPRREPAIPFSFGNLFKSKSERFLYSLGLIKSYS

SNPs (tot: 50)

Position	A %	C %	G %	T %	Probability
426	66		33		0.997452
460		75	25		0.996473
464	75			25	0.996473
468	25		75		0.996473
473	25	75			0.996473
474			25	75	0.996473
479			25	75	0.996473
481		75		25	0.996473
482	75			25	0.996473
486		75	25		0.996473
496	75		25		0.996473
628	33		66		0.997452
686		33		66	0.997452
704	66	33			0.997452
710	66		33		0.997452
711		33		66	0.997452
749		33		66	0.997452
846		50		50	1.0
847		50	50		1.0
851	20	30	50		1.0
852	50		50		1.0
855			50	20	1.0
856	20	50			1.0
857		70		30	1.0
858	80	20			0.999996
859	50	30			1.0
860		30	50		1.0
861		50	50		1.0
864	40		10		1.0
865	10	40		50	1.0
868		45		54	1.0
893	66	33			1.0
955		25		75	0.996473
956		25	75		0.996473
981			75	25	0.996473
1083		16	83		0.994512
1084		16		83	0.994512
1087		83		16	0.994512
1163	85			14	0.993533
1169	14	85			0.993533
1171	14			85	0.993533
1177	14	85			0.993533
1180			14	85	0.993533
1210	16	83			0.994512
1220			16	83	0.994512
1225	16		83		0.994512
1229		83		16	0.994512
1232		83		16	0.994512
1266	16		83		0.994512
1313			83	16	0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain