SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene15193

Length: 852 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene15193

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cpk19 calcium-dependent protein kinase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TY96_PHYPA	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	33%
Blast2go	calcium-dependent protein kinase	-	-	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	kinase activity	GO:0016301	Molecular Function	0.0	85%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	85%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Full-Lengther Next Prediction

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
278	33		66		0.997452
312	75	25			0.996473
313	75		25		0.996473
315		25		75	0.996473
320		25		75	0.996473
321		25		75	0.996473
325	66		33		0.997452
327	66			33	0.997452
328	66		33		0.997452
329			66	33	0.997452
330		33	66		0.997452
334		33	66		0.997452
612	90	10			0.90298
613	90		10		0.90298
620	88	11			0.923564
621	88			11	0.923564
622	88			11	0.923564
623			12	87	0.992554
625	87	12			0.992554
627			12	87	0.992554
631	12		87		0.992554
634	12		87		0.992554
679		11		88	0.923564
681		88		11	0.923564
682	88	11			0.923564
687	88	11			0.923564
690	88		11		0.923564
692	88	11			0.923564
693	88			11	0.923564
694	88		11		0.923564
695		88		11	0.923564
699		88		11	0.923564
700		11		88	0.923564
701	11		88		0.923564
704		88		11	0.923564
742		87	12		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain