SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene15182

Length: 1768 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene15182

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Armadillo repeat-containing protein-like n=1 Tax=Oryza sativa Japonica Group RepID=Q8GSZ9_ORYSJ	-	-	1.0e-33	25%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	24%
Blast2go	protein	-	-	0.0	47%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PSB5

Fln msg: your sequence is longer than subject: 550 - 497

Fln protein: AEKAAVVIVASAFNLCTYDQKLQAEKLLYNLCEHDKSAIIQAATSGLFGPLVRRLASGDEALQLEMLETICSLDLNEQGICSLVDCGVVPPLLNLLQNGKSDCRLKAAKALKLLSNSDINKVVMAKSGTLPVLVRSLSSRVPDLSLLILETLANLASEKQSAAQIEHEVVVSRLIDMLKFEDVLMHENALRTLDCIAKDSHTVRQWIADLKVVPRLYSLVQNEKLSSSCRVNILNLISYLAQDRITRQAIVTPRKMLSFFVGILKEGQGSQGYPYEIEAVLAILSVMAKMDEAKHSMVSETSLLQFSVDCLKSDRPKIKECAAKILARLTDPNLVDTNFQLNLARMGMIPLLVEMLKSGSERAKQYASVTLTHMSMQTPYLTERQSVIKKFLAKLGFSRYKICRVHAGKCSSRGTLCLVESEAVPNLIYLIKDGQHRSAQRAIQALLTLVKNKKDMDKGIDYLVRNDIISSLVHIIGKNENSTEKAVILLERIFKCKKYRVPRYAELAKAALYTTMATGKPDARKAAATALMHLGMVPNTSTYTQTETG*

Protein Length: 551

Fln nts: GGCAGAGAAGGCGGCTGTTGTCATAGTGGCAAGTGCTTTTAACTTGTGCACATATGACCAGAAGTTGCAAGCAGAAAAGCTCTTGTACAACCTTTGTGAGCATGACAAGTCAGCTATCATTCAAGCAGCAACATCAGGACTTTTTGGACCATTAGTTCGCAGGTTGGCTTCTGGTGATGAAGCTTTGCAGCTGGAGATGCTGGAAACCATTTGCTCCCTTGACCTCAATGAACAAGGAATCTGTTCTCTGGTGGATTGTGGTGTAGTTCCACCCCTGTTGAATCTCTTGCAGAATGGCAAGTCAGATTGTAGACTAAAAGCTGCAAAAGCGCTTAAGCTTCTCTCCAATTCAGATATCAACAAAGTTGTGATGGCAAAATCTGGCACTCTCCCTGTGCTTGTCAGATCACTTTCTTCTCGGGTGCCTGATCTTTCTCTTCTAATTTTGGAAACTCTTGCAAACCTAGCATCAGAAAAGCAAAGTGCTGCCCAAATTGAACATGAGGTTGTTGTTTCACGTTTGATTGACATGTTAAAATTTGAGGATGTTCTCATGCATGAAAATGCATTGAGAACATTAGACTGCATTGCCAAGGACAGTCATACAGTCCGCCAATGGATAGCAGATTTAAAGGTGGTCCCTAGATTATATAGCCTTGTCCAAAATGAGAAACTTTCTTCCTCGTGCAGGGTGAACATCTTAAATCTCATTTCTTACCTTGCACAAGATCGTATTACTCGTCAGGCAATTGTAACTCCAAGAAAGATGCTGAGCTTTTTTGTTGGGATCTTAAAAGAAGGCCAAGGATCTCAAGGATATCCATATGAGATTGAAGCAGTTTTGGCAATACTATCTGTGATGGCAAAGATGGATGAAGCAAAGCATTCCATGGTTTCAGAAACTTCTCTGCTGCAATTTTCAGTGGATTGTTTGAAATCAGATCGTCCGAAGATAAAAGAGTGTGCTGCAAAGATTCTTGCAAGGCTAACTGATCCAAATCTTGTAGATACAAATTTCCAACTGAATTTGGCAAGAATGGGTATGATTCCTCTTCTGGTTGAAATGCTGAAGTCTGGTTCAGAGCGTGCAAAGCAATATGCATCCGTTACACTTACACATATGTCCATGCAAACACCATATTTAACAGAAAGGCAGTCTGTTATTAAGAAGTTTCTTGCAAAGCTTGGTTTTTCAAGGTACAAAATTTGCAGAGTTCATGCTGGCAAGTGTAGTTCAAGAGGAACCCTTTGCCTGGTTGAATCTGAAGCCGTTCCTAATCTCATTTATTTGATCAAGGATGGCCAACACAGAAGTGCACAACGAGCAATTCAAGCTTTGCTTACTTTGGTGAAGAACAAAAAAGATATGGATAAAGGCATTGATTATCTTGTGAGAAATGATATAATCAGTTCTCTTGTCCACATTATAGGAAAGAATGAAAATTCTACTGAGAAAGCAGTTATACTGTTGGAAAGGATATTTAAATGTAAGAAATATAGAGTTCCAAGATATGCAGAGTTGGCTAAGGCAGCATTATATACAACCATGGCAACAGGAAAACCAGATGCCCGCAAGGCTGCAGCCACAGCCCTAATGCATCTTGGAATGGTGCCAAACACCTCAACCTATACACAAACTGAAACGGGTTAA___ACATATTTATGGCTAAAATTTTCTTCCGGTCACAATTCCTCCATTGTCTCTGAAATTCCTAAAGACCTTGACAGTGGGCTCTTCTTTTATTCTTTTCAACCCCTGTATTGCCCATTG

Fln Alignment:

Contig15182___NSDINKVVMAKSGTLPVLVRSLSSRVPDLSLLILETLANLASEKQSAAQIEHEVVVSRLIDMLKFEDVLMHENALRTLDCIAKDSHTVRQWIADLKVVPRLYSLVQNEKL--SSSCRVNILNLISYLAQD-RITRQAIVTPRKMLSFFVGILKEGQGSQGYPYEIEAVLAILSVMAKMDEAKHSMVSETSLLQFSVDCLKSDRPKIKECAAKILARLTDPNLVDTNFQLNLARMGMIPLLVEMLKSGSERAKQYASVTLTHMSMQ
C0PSB5_______________NAD-NRLLIAEAGAIPQLVKLLSSTDMKTQEHAVTALLNLSIHSSNKGFIVQAGAINRIIDVLKHGSTEARENAAATLFSLSVVDEN-KVIIGASGAIPPLVDLLRDGTVRGKKDAATAIFNLSIYQGNKFRAVRAGVVPPLIAL-----LVDQSIGM------VDEALAILAILATHQEGRIA-IGQQSAIDILVELIHSGSARNKENAAAVLLAL---GMNDSSHLLAAMQLGVFEYLIELAQNGTARARRKARGLLDLISKQ

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
695	33		66		0.997452
823		33		66	0.997452
826		66		33	0.997452
846	33			66	0.997452
850		33	66		0.997452
854	33			66	0.997452
893	33	66			0.997452
897			66	33	0.997452
1332	50	50			1.0
1334	50			50	1.0
1341			71	28	1.0
1343	21	7		71	1.0
1344		21		78	1.0
1346	7	21	71		1.0
1347	21	78			1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain