SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene15142

Length: 3291 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene15142
CGTCGTGACCTTGGCTGTCACTCATAGCTTCTGCATACATATGCAGTTTGGGAATAACATAAACGATCATTTTTTCGGGGTGTTTGACGGGCACGGAGAATTTGGAACGCAGTGCTCGGACCTTGGCTGTCAACATTTATGCGAAAACTTGCTCAGGGACCCAGATTTCCGTACGGATGCTGTGAAGGGATACCATTCAGCTTTTGAAGCCACCAATGGCCAGCTACATCGCCACAGCATAGATGATTCCATGAGTGGCACGACTGCAATAACTGTCCTAGTGAGAGGTGATACATTGTATGTTGCCAATGTCGGAGATTCTAGGGCTGTTATCGCAGAGAGAAGGGGAAAGGACCTTGTCGCAGTGGACCTCTCCAGTGACCAGACACCTTTCCGAGCAGATGAGTGTGCTCGTGTGAGAAGATGTGGAGCACGGGTGTTGACTCTGGACCAGCTTGAAGGGTTGAAAAACCAGAATGTACAGTGTTGGGGAGGTGAAGAAGATGACGATGGAGATCCTCCTCGCCTTTGGGTTCAAAATGGGATGTATCCTGGCACTGCCTTTACTAGAAGTGTTGGAGATACTATTGCTGAAAACATAGGGGTTACTTCAGTTCCTGAGGTTCTTGTGATGCAGCTTACACCTATGCATCCATTCTTTGTTATTGCAAGTGATGGAGTTTTTGAGTTTCTCTCCAGTCAAGCAGTGGTTGATATGGTTGCCAAATTCAAAGATCCTCGCGATGCTTGTGCTGAAATTGTTGCTGAATCATACCGCTTATGGTTGGAATATGAAACTCGCACTGATGACATTACAGTTATTGTTGTACAGATTAATGGCTTCCAAAACTCAGGTACAGTAAAGCTGGTAAATAATCATAATGCAAAGCTAGTCCACGGCCTCTCAGGAGCAGAAGAAAGCAATGGATCACCTTTATCTAGTGGGGAGAGTGTTAGGACCTCTCGTCCTGTACGGCATGATTTATCGCGAACACGTGTCAGGGCCATTGAGTCTTCTTTAGAGCATGGCCCAGTTTGGACTCCTCCAAATTTATCTGTTCAAAAGACTCCAGAAGAATTAGATCATATTGGACGGGCACTGCAAGGAAATTTTCTCTTCAACAAATTATCGAAGGCACAATCTCAGATGTTATATGATTGCATGGAAAGGGTTCAAGTTAGGGCAGGAGATATTGTTATCCGACAGGGTGCAGAAGGAAATTGTTTCTATATTGTTCAAAAAGGAGAGTTTGAAGTCTTAATTTCCAAGGAAGGGAGTCCTGATGAGGAGCTTGGCACAGTTGTGCACCGCTACACTTCTAATAAGTTTTCATGCTTTGGGGAGTTGGCTCTTATGTACAACAAACCACTCCAAGCTTCTGTCCGTGCTTTAACCGATGGTTCTCTCTGGGCTCTGAAAAGAGAGGACTTTCGTGGAGTCATTTTAACAGGATTCACCAATCCTTCTATGTTAAATGTCATACGGTCTGTAGATGTGCTTGCAAAGTTAAGCGTCTTACAGATTAACCGTTTAGCAGGTTCATTATCAGAAGTTTCATTTATGGATGGAGAAAGAATAGTTGATAAGCATGAGAATCTTTCAGCATTTTATATTGTTCAGCATGGAGAGGTGGAATTAACCTATCATTCAGAGTTAGATTCAGAGTCAACTACCTGGGAGATCCTTTCTCATGATAATGGGTGGGAAGATTTAAATGAAAGTCAGAAGTGCTCAAGGAGGAAAGAGGGGAGTTATTTTGGAGAACGGATTCTTCTTGGTGAGCAGATCAATTCAGTAACTGCAGTTGCTATTGGTAATGTTGTGTGTTTGATGATCACAAAGGAGAAGTTTGATTCATTGGTGGGGCCCTTGTACAGAATCAACCAAGATGATATCCACATAAGAGATCACACAAGGAGAGAACATAAGCTGGATATCAAGGCCACAGATTTCTCAGGAGTCCAGATATCAGAGCTGGAATGGCAAAGAACGGTGTATGCTACAGACTGCTGTGAAATTGGACTGGTTCTTAAGAAGGAATCAGAGAATCTGCTGAGCTTGAAAAGGTTTTCAAAGCACAAGATAAAGCAGCTTGGACGTGAAGTACAGGTTCTTGAGGAGAAGGCTCTTATGAAGAGTTTGTGTCCCTCATTATTTGTGCCACAGGTCCTCTGTTCATGTGCTAATCAAGAATTTGCTGCTATTTTGCTGAACACAAGTCTAGCTTGTCCTTTGGCAGCAATTCTGCATGCACCATTAAAAGAAGATTCTGCTCGTTTTATTTCTGCTTCGGTTGTTGTAGCTGTGGAACTGTTGCACAAGGATGGAGTTTTATACAGGGGTGTTTCACCTGATATTCTAATGGTTGATCAGAAAGGCCATTTGCAGCTGGTTGACTTCCGGTTTGACAAAAAAGCTATCTGATGAAAGAACATTCACAATATGTGGGATGGCAGACTACTTAGCCCCAGAAATAATTCAGGGAAAAGGACATGGGCTTACTGCAGACTGGTGGGCTTTAGGAGTGCTTATCTATTTTATGTTGCATGGTGATCTTCCATTTGGGTCATGGAGAGAAAGTGATTTGGACATTTTTGCAAAAATTGCACGAGGAGAGTTGTTGTTCCCAAACCATTTTAGTTTGGAGGTTATTGACCTACTGAAAAAGTTGCTACAAGTTGATGACAATGCCAGACTCGGTTGTAAGGGAGCAAATTCAATTAAGAGTCATCCTTGGTTCAAAGATATGGATTGGAAATGCCTTTCAGAATGTGGTGTACCTGTGCCTGAAGAGATCTTATCTCGTATTGATTCAACGTCTGAACTTCATTATGCCGATGAACACCAGTTGTCTGGTCTTTGTTCATCAATTGACTTGAAAGACTTAAATACACAAGAATGGCTGGATGAGTGGTAGCAGTTTACTGCAGAGGTATCTTGGCCATCCTGATGCTACTAATGAGTTGGATGCCTAAATGGCTGGATGAGTGGTAGCAGTTTACTGCAGAGGTATCTTGGCCATCCTGATGCTACTAATGAGTTGGATGCCTAACTGGCTAGATATTTTACTGATTGTACAAATTCAATTCCTTTGAAACATTTCTTGGTTTTAACCTAGTTTACGTTTTCCACTGTAAAGGCAAACTTGTCAAATCTGTGCACTAGATAAAAAATGTACACAGCAAAAGTTTTTTACGCCTCGGAAATTTTGAATGATGTGTTTGTGCCATGTCAAAACTGAGAGATTTGCTATGATTCTCAGATCCATAATCGCAAAATTCAAGAGTGCA

Ace file of the UniGene sp_v2.0_unigene15142 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative cAMP-dependent protein kinase [Arabidopsis thaliana]	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	29%
Blast2go	protein phosphatase 2c and cyclic nucleotide-binding kinase domain-containing protein	-	-	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	73%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	73%

Source	InterPros	Term	Type	Identity
Sma3	Protease inhibitor I4, serpin	IPR000215	-	-
Sma3	Protein phosphatase 2C, manganese/magnesium aspartate binding site	IPR000222	-	-
Sma3	Cyclic nucleotide-binding domain	IPR000595	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	AGC-kinase, C-terminal	IPR000961	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	cAMP/cGMP-dependent protein kinase	IPR002373	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3		IPR014045	-	-
Sma3	RmlC-like jelly roll fold	IPR014710	-	-
Sma3	Protein phosphatase 2C	IPR015655	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLH8

Fln msg: your sequence is longer than subject: 808 - 526

Fln protein: VVTLAVTHSFCIHMQFGNNINDHFFGVFDGHGEFGTQCSDLGCQHLCENLLRDPDFRTDAVKGYHSAFEATNGQLHRHSIDDSMSGTTAITVLVRGDTLYVANVGDSRAVIAERRGKDLVAVDLSSDQTPFRADECARVRRCGARVLTLDQLEGLKNQNVQCWGGEEDDDGDPPRLWVQNGMYPGTAFTRSVGDTIAENIGVTSVPEVLVMQLTPMHPFFVIASDGVFEFLSSQAVVDMVAKFKDPRDACAEIVAESYRLWLEYETRTDDITVIVVQINGFQNSGTVKLVNNHNAKLVHGLSGAEESNGSPLSSGESVRTSRPVRHDLSRTRVRAIESSLEHGPVWTPPNLSVQKTPEELDHIGRALQGNFLFNKLSKAQSQMLYDCMERVQVRAGDIVIRQGAEGNCFYIVQKGEFEVLISKEGSPDEELGTVVHRYTSNKFSCFGELALMYNKPLQASVRALTDGSLWALKREDFRGVILTGFTNPSMLNVIRSVDVLAKLSVLQINRLAGSLSEVSFMDGERIVDKHENLSAFYIVQHGEVELTYHSELDSESTTWEILSHDNGWEDLNESQKCSRRKEGSYFGERILLGEQINSVTAVAIGNVVCLMITKEKFDSLVGPLYRINQDDIHIRDHTRREHKLDIKATDFSGVQISELEWQRTVYATDCCEIGLVLKKESENLLSLKRFSKHKIKQLGREVQVLEEKALMKSLCPSLFVPQVLCSCANQEFAAILLNTSLACPLAAILHAPLKEDSARFISASVVVAVELLHKDGVLYRGVSPDILMVDQKGHLQLVDFRFDKKAI*

Protein Length: 809

Fln nts: CGTCGTGACCTTGGCTGTCACTCATAGCTTCTGCATACATATGCAGTTTGGGAATAACATAAACGATCATTTTTTCGGGGTGTTTGACGGGCACGGAGAATTTGGAACGCAGTGCTCGGACCTTGGCTGTCAACATTTATGCGAAAACTTGCTCAGGGACCCAGATTTCCGTACGGATGCTGTGAAGGGATACCATTCAGCTTTTGAAGCCACCAATGGCCAGCTACATCGCCACAGCATAGATGATTCCATGAGTGGCACGACTGCAATAACTGTCCTAGTGAGAGGTGATACATTGTATGTTGCCAATGTCGGAGATTCTAGGGCTGTTATCGCAGAGAGAAGGGGAAAGGACCTTGTCGCAGTGGACCTCTCCAGTGACCAGACACCTTTCCGAGCAGATGAGTGTGCTCGTGTGAGAAGATGTGGAGCACGGGTGTTGACTCTGGACCAGCTTGAAGGGTTGAAAAACCAGAATGTACAGTGTTGGGGAGGTGAAGAAGATGACGATGGAGATCCTCCTCGCCTTTGGGTTCAAAATGGGATGTATCCTGGCACTGCCTTTACTAGAAGTGTTGGAGATACTATTGCTGAAAACATAGGGGTTACTTCAGTTCCTGAGGTTCTTGTGATGCAGCTTACACCTATGCATCCATTCTTTGTTATTGCAAGTGATGGAGTTTTTGAGTTTCTCTCCAGTCAAGCAGTGGTTGATATGGTTGCCAAATTCAAAGATCCTCGCGATGCTTGTGCTGAAATTGTTGCTGAATCATACCGCTTATGGTTGGAATATGAAACTCGCACTGATGACATTACAGTTATTGTTGTACAGATTAATGGCTTCCAAAACTCAGGTACAGTAAAGCTGGTAAATAATCATAATGCAAAGCTAGTCCACGGCCTCTCAGGAGCAGAAGAAAGCAATGGATCACCTTTATCTAGTGGGGAGAGTGTTAGGACCTCTCGTCCTGTACGGCATGATTTATCGCGAACACGTGTCAGGGCCATTGAGTCTTCTTTAGAGCATGGCCCAGTTTGGACTCCTCCAAATTTATCTGTTCAAAAGACTCCAGAAGAATTAGATCATATTGGACGGGCACTGCAAGGAAATTTTCTCTTCAACAAATTATCGAAGGCACAATCTCAGATGTTATATGATTGCATGGAAAGGGTTCAAGTTAGGGCAGGAGATATTGTTATCCGACAGGGTGCAGAAGGAAATTGTTTCTATATTGTTCAAAAAGGAGAGTTTGAAGTCTTAATTTCCAAGGAAGGGAGTCCTGATGAGGAGCTTGGCACAGTTGTGCACCGCTACACTTCTAATAAGTTTTCATGCTTTGGGGAGTTGGCTCTTATGTACAACAAACCACTCCAAGCTTCTGTCCGTGCTTTAACCGATGGTTCTCTCTGGGCTCTGAAAAGAGAGGACTTTCGTGGAGTCATTTTAACAGGATTCACCAATCCTTCTATGTTAAATGTCATACGGTCTGTAGATGTGCTTGCAAAGTTAAGCGTCTTACAGATTAACCGTTTAGCAGGTTCATTATCAGAAGTTTCATTTATGGATGGAGAAAGAATAGTTGATAAGCATGAGAATCTTTCAGCATTTTATATTGTTCAGCATGGAGAGGTGGAATTAACCTATCATTCAGAGTTAGATTCAGAGTCAACTACCTGGGAGATCCTTTCTCATGATAATGGGTGGGAAGATTTAAATGAAAGTCAGAAGTGCTCAAGGAGGAAAGAGGGGAGTTATTTTGGAGAACGGATTCTTCTTGGTGAGCAGATCAATTCAGTAACTGCAGTTGCTATTGGTAATGTTGTGTGTTTGATGATCACAAAGGAGAAGTTTGATTCATTGGTGGGGCCCTTGTACAGAATCAACCAAGATGATATCCACATAAGAGATCACACAAGGAGAGAACATAAGCTGGATATCAAGGCCACAGATTTCTCAGGAGTCCAGATATCAGAGCTGGAATGGCAAAGAACGGTGTATGCTACAGACTGCTGTGAAATTGGACTGGTTCTTAAGAAGGAATCAGAGAATCTGCTGAGCTTGAAAAGGTTTTCAAAGCACAAGATAAAGCAGCTTGGACGTGAAGTACAGGTTCTTGAGGAGAAGGCTCTTATGAAGAGTTTGTGTCCCTCATTATTTGTGCCACAGGTCCTCTGTTCATGTGCTAATCAAGAATTTGCTGCTATTTTGCTGAACACAAGTCTAGCTTGTCCTTTGGCAGCAATTCTGCATGCACCATTAAAAGAAGATTCTGCTCGTTTTATTTCTGCTTCGGTTGTTGTAGCTGTGGAACTGTTGCACAAGGATGGAGTTTTATACAGGGGTGTTTCACCTGATATTCTAATGGTTGATCAGAAAGGCCATTTGCAGCTGGTTGACTTCCGGTTTGACAAAAAAGCTATCTGA___TGAAAGAACATTCACAATATGTGGGATGGCAGACTACTTAGCCCCAGAAATAATTCAGGGAAAAGGACATGGGCTTACTGCAGACTGGTGGGCTTTAGGAGTGCTTATCTATTTTATGTTGCATGGTGATCTTCCATTTGGGTCATGGAGAGAAAGTGATTTGGACATTTTTGCAAAAATTGCACGAGGAGAGTTGTTGTTCCCAAACCATTTTAGTTTGGAGGTTATTGACCTACTGAAAAAGTTGCTACAAGTTGATGACAATGCCAGACTCGGTTGTAAGGGAGCAAATTCAATTAAGAGTCATCCTTGGTTCAAAGATATGGATTGGAAATGCCTTTCAGAATGTGGTGTACCTGTGCCTGAAGAGATCTTATCTCGTATTGATTCAACGTCTGAACTTCATTATGCCGATGAACACCAGTTGTCTGGTCTTTGTTCATCAATTGACTTGAAAGACTTAAATACACAAGAATGGCTGGATGAGTGGTAGCAGTTTACTGCAGAGGTATCTTGGCCATCCTGATGCTACTAATGAGTTGGATGCCTAAATGGCTGGATGAGTGGTAGCAGTTTACTGCAGAGGTATCTTGGCCATCCTGATGCTACTAATGAGTTGGATGCCTAACTGGCTAGATATTTTACTGATTGTACAAATTCAATTCCTTTGAAACATTTCTTGGTTTTAACCTAGTTTACGTTTTCCACTGTAAAGGCAAACTTGTCAAATCTGTGCACTAGATAAAAAATGTACACAGCAAAAGTTTTTTACGCCTCGGAAATTTTGAATGATGTGTTTGTGCCATGTCAAAACTGAGAGATTTGCTATGATTCTCAGATCCATAATCGCAAAATTCAAGAGTGCA

Fln Alignment:

Contig15142___FGNNINDHFFGVFDGHGEFGTQC------------------------------SDLGCQHLCENL--LRDPDFRTDA---------------VKGYHSAFEATNGQLHRH-SIDDSMSGTTAITVLVRGDTLYVANVGDSRAVIAER-RGKDLVAVDLSSDQTPFRADECARVRRCGARVLTLDQLEGLKNQNVQCWXXXXXXXXDPPRLWVQNGMYPGTAFTRSVGDTIAENIGVTSVPEVLVMQLTPMHPFFVIASDGVFEFLSSQAVVDMVAKFKDPRDACAEIVAESYRLW-LEYET-RTDDITVIVVQIN
B8LLH8_______________FGSRKDTVFCGVFDGHGPFGHLVAKKVRDSLPSKLSNQWEAEMKDDDSIKEANSTVGSMNSEESLSVTMDDEWRESADMEEREKCPEIFLTLKESFLKAFKVMDKELRLHPTIDCFCSGTTAVTLVKQGQDLVIGNVGDSRAVLGTRVQDNSLSAVQLTVDLKPNLPREAERIRQCKGRVFALHDEPEVS------------------RVWLPHNDSPGLAMARAFGDFCLKDFGLIAVPDVSYRRLTERDEFIVLASDGVWDVLSNKEVVDIVASAPSQTTAARALVEYAVRAWRLKYPTSKVDDCAVVCLFLN

SNPs (tot: 54)

Position	A %	C %	G %	T %	Probability
585		20		80	0.995493
586		20		80	0.995493
588		80		20	0.995493
632		75		25	0.996473
1270	12	87			0.992554
1272	75			25	1.0
1273	87			12	0.992554
1318		14		85	0.993533
1374		83		16	0.994512
1395	14		85		0.993533
1398	85		14		0.993533
1450		12		87	0.992554
1451		12		87	0.992554
1452		12		87	0.992554
1453	12		87		0.992554
1513		85		14	0.993533
1514		85		14	0.993533
1706	20			80	0.995493
1709		75		25	0.996473
1786		83		16	0.994512
1787			16	83	0.994512
1828	66			33	1.0
2393		25		75	0.996473
2674	83		16		0.994512
2735			83	16	0.994512
2738	20	80			0.995493
2742		20	80		0.995493
2743	80	20			0.995493
2744	20			80	0.995493
2746		80	20		0.995493
2747	80		20		0.995493
2750	20	80			0.995493
2753		20		80	0.995493
2754			20	80	0.995493
3019	88			11	0.923564
3024			11	88	0.923564
3030		11		88	0.923564
3032	11		88		0.923564
3033	11			88	0.923564
3035		88	11		0.923564
3039			11	88	0.923564
3042		11		88	0.923564
3160	40			60	1.0
3161			40	20	1.0
3163		20	40	20	0.994159
3164	60	20		20	0.99255
3165		60		40	1.0
3166	60			40	1.0
3167	20		40	40	1.0
3168	20	60		20	0.99255
3169	25	75			0.996473
3172	25	25	50		0.995533
3173		25	50		0.995533
3175		50	50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain