SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene15126

Length: 2555 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene15126
ATTTCATGAATAATAAGGTATATCATACTATATTTTCGGAGACGTTTCTCAATCAATCTATAGTGCATATCGTTCAGTGACGAAGGGCGGCTAGTTGATGAGGTCGTAAAAGAAGTGTGGAGAAAGGTTAGTAAAACACCTCTTTATGTAGCCGAATATGCTACTGGCCTGAAAGAGAAAATAGAAAACGTGGAAAGAATGGTGCAGCAGCAAAGCCAGAAGATGAGGGTTGTGGGAATTGTGGGTCTTGGCGGGTAGGCAAAACGACCCTTGCAAAAGAATTCTTCAACAGACACAGATCAAATTATGATCGATGTTGTTTTCTGTCTGATGTGAGAGAAACCGCAGCCAAGAGCTCTTTAAGTTCATTGCAGACACCACTTCTTAAAGACTTGGCTCATTTGCAGGACGAGCAAATAAGCGACACTGATGAAGGCATAGGGAAGCTCCAAAAGCATCTTTCATCCTGTCCCCCATGTCTGATAGTCTTAGATGATGTTGATCATATTGATCAACTTGACGCATTGTTTTCACCGGTGAAAGACACCATTCAATCCAGTAGTTTAATCTTGGTTACTTCTCGCAAAAGGGATGTACTTAGAAGCGCGGGAATTATAGAGGACTCTATTTACCCGCAAACAGGCCTTAACCAACAACACTCTAGAGCACTATTCTGCTCGCATGCCTTTGACCAGAGTTGTCCTGTGCCAGGATTTGAACAACTGGTAGAAGAGTTTTTGGATTTCTGTCATGGATTGCCCTTATCTCTTAAGGTCGTTGGAGCGGCTATTCGTGGAGAAGATTCTGAGTTTTGGAAAAGAGAGTTAAACCAAATCAGAAGAATACTTCCTGAGGATATTCATAGCAAGCTTAAAATTAGCTATGATGGTCTCGGTAAAGAGGAGCAGGAGATCTTTTTAGACGTCGCTTGTTTTTTTATAGGAGAAAACAGAGATACCGCCATCGCTATATGGAACGGATCTGGTTGGGACGGATGGCTGGGTCTCCGTAACTTAGAGAACAGATGCCTTCTTGAGATCGACAGTGAAGAGTGTATAAGAATGCACGACCACCTCCGCGATCTCGGCAGAGATGTAGCAGAGAAGAAACATCCGCTTCGGCTTTCGCGACCAAATGTCAATCTTCTTCGTACTCTTTCCCCCTCATCGCCTGTGCAGGTGCGAGGAATTAGCATGGATTATGGAAATGGCTGTGAACTATTTTTCGAAAACGTTCCGGGCAACTGCAACCTAAGCAGGTTGGAACTGCTTAGGGGTGAAGGTTCTTTTGTTGAAAGCGTATTCAGTTCAGCGGAGTTACGACAACTGATATATCTCCGATGGGAGAACTGTCCGATCTCCTCAATATCTTTCACAATTCCAAGGAATTTAAGAGTGTTATACATAGAGGGGGAAGAATTGAACACACTCTGGCAACATGAATCTCAGGCACCACTACAGTTGACGGAATTGTATATTGATGCTCCCCTTTCAGAGGTTCCACAGTCTATTGGTAAACTGAATCGGCTCGAAAGAATTGTCTTGAAAAATGGTTATTTTAACACTTTACCAAATGAATTCTATGATATGCATTCATTGAAACATATCACGTTACAAAACTGTAAACAAATGATGTTGCTGCCGGATTCAGTTGGGATCTTGACGGGCCTCCAGACACTCGATTTTTCCGGGTGCTCCAGCTTGAAGCAGCTCCCAGACTCGACGGGGCAGCTGACGGGCCTCAAGAGCCTCAACTTGGAATACTGCACCAGCCTGCAGGGGCTCCCAGACTCGGTGGGGCAGCTGACGGGCCTCCAGAAACTCGACTTGCAAGAGTGCACCAGCCTGCAGGGGCTCCCAGACTCGGTGGGGCAGCTGACGGGCCTCCAGAAACTCTACTTGAACGGGTGCTCCAGCCTGCAGGGGCTCCCAGACTCGGTGGGGCAGCTGATGGGCCTCCATACACTCCACTTGGAAAACTGCACCAGCTTACAGGGGCTCCCATACTCAGTCGAGAATTTAACGAGACTCAAACGGCTTAACTTGTCTGGGTGTTACAATTTACAGATGCTGCCCAATTTTCGGCATTTGAGCTCGTTGGAGGAGCTTTACTTGTCTGGATGTTCCAATTTACAGATGCTGCCCGATGTTCAGCATTTGAGCTCGCTGGTGAATCTTGATATGTCTCACTGTTCAAAACTGCAATGGGGTGCTGGAGTAGTCGAGTCCCTGCGCCATCGACTGGGAAATGGCTTCATCGAAGAAAGGTGTGAAGAAGGCAGCGAAAACAGTAATGAAAGAAAGTTGGGAAGAAGGCAGCGAAAACAGTAATGAATAAAGCTGCAGCGAGTTGAATAATATAAAAGAACTTCTTAAGATCAGATGGCCACGGTGCTCGCCACACGCCGCAAAGAGAGCTGTGTCATTAATCTTCATAGAGCTGTAGTCATAGGCAAAATGAATTACACAATGTACAGAATGCTCTACATTTTAGATCAGGTGGAGTAGTAAAATATACTGGTGCAAAATATATTGAGTTTATAGTGCACATATTCA

Ace file of the UniGene sp_v2.0_unigene15126 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative TIR/NBS/LRR disease resistance protein (Fragment) n=1 Tax=Pinus taeda RepID=Q8L8I7_PINTA	-	-	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	56%
Blast2go	nbs lrr	-	-	62%

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQE2

Fln msg: warning!, putative chimeric sequence! or repetitive structureUnexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 63 aas, your sequence is shorter than subject: 777 - 1071

Fln protein: IS*IIRYIILYFRRRFSINL*CISFSDEGRLVDEVVKEVWRKVSKTPLYVAEYATGLKEKIENVERMVQQQSQKMRVxxxxxxxxxxxxxxxxxFFNRHRSNYDRCCFLSDVRETAAKSSLSSLQTPLLKDLAHLQDEQISDTDEGIGKLQKHLSSCPPCLIVLDDVDHIDQLDALFSPVKDTIQSSSLILVTSRKRDVLRSAGIIEDSIYPQTGLNQQHSRALFCSHAFDQSCPVPGFEQLVEEFLDFCHGLPLSLKVVGAAIRGEDSEFWKRELNQIRRILPEDIHSKLKISYDGLGKEEQEIFLDVACFFIGENRDTAIAIWNGSGWDGWLGLRNLENRCLLEIDSEECIRMHDHLRDLGRDVAEKKHPLRLSRPNVNLLRTLSPSSPVQVRGISMDYGNGCELFFENVPGNCNLSRLELLRGEGSFVESVFSSAELRQLIYLRWENCPISSISFTIPRNLRVLYIEGEELNTLWQHESQAPLQLTELYIDAPLSEVPQSIGKLNRLERIVLKNGYFNTLPNEFYDMHSLKHITLQNCKQMMLLPDSVGILTGLQTLDFSGCSSLKQLPDSTGQLTGLKSLNLEYCTSLQGLPDSVGQLTGLQKLDLQECTSLQGLPDSVGQLTGLQKLYLNGCSSLQGLPDSVGQLMGLHTLHLENCTSLQGLPYSVENLTRLKRLNLSGCYNLQMLPNFRHLSSLEELYLSGCSNLQMLPDVQHLSSLVNLDMSHCSKLQWGAGVVESLRHRLGNGFIEERCEEGSENSNERKLGRRQRKQ*

Protein Length: 778

Fln nts: ATTTCATGAATAATAAGGTATATCATACTATATTTTCGGAGACGTTTCTCAATCAATCTATAGTGCATATCGTTCAGTGACGAAGGGCGGCTAGTTGATGAGGTCGTAAAAGAAGTGTGGAGAAAGGTTAGTAAAACACCTCTTTATGTAGCCGAATATGCTACTGGCCTGAAAGAGAAAATAGAAAACGTGGAAAGAATGGTGCAGCAGCAAAGCCAGAAGATGAGGGTTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTTCTTCAACAGACACAGATCAAATTATGATCGATGTTGTTTTCTGTCTGATGTGAGAGAAACCGCAGCCAAGAGCTCTTTAAGTTCATTGCAGACACCACTTCTTAAAGACTTGGCTCATTTGCAGGACGAGCAAATAAGCGACACTGATGAAGGCATAGGGAAGCTCCAAAAGCATCTTTCATCCTGTCCCCCATGTCTGATAGTCTTAGATGATGTTGATCATATTGATCAACTTGACGCATTGTTTTCACCGGTGAAAGACACCATTCAATCCAGTAGTTTAATCTTGGTTACTTCTCGCAAAAGGGATGTACTTAGAAGCGCGGGAATTATAGAGGACTCTATTTACCCGCAAACAGGCCTTAACCAACAACACTCTAGAGCACTATTCTGCTCGCATGCCTTTGACCAGAGTTGTCCTGTGCCAGGATTTGAACAACTGGTAGAAGAGTTTTTGGATTTCTGTCATGGATTGCCCTTATCTCTTAAGGTCGTTGGAGCGGCTATTCGTGGAGAAGATTCTGAGTTTTGGAAAAGAGAGTTAAACCAAATCAGAAGAATACTTCCTGAGGATATTCATAGCAAGCTTAAAATTAGCTATGATGGTCTCGGTAAAGAGGAGCAGGAGATCTTTTTAGACGTCGCTTGTTTTTTTATAGGAGAAAACAGAGATACCGCCATCGCTATATGGAACGGATCTGGTTGGGACGGATGGCTGGGTCTCCGTAACTTAGAGAACAGATGCCTTCTTGAGATCGACAGTGAAGAGTGTATAAGAATGCACGACCACCTCCGCGATCTCGGCAGAGATGTAGCAGAGAAGAAACATCCGCTTCGGCTTTCGCGACCAAATGTCAATCTTCTTCGTACTCTTTCCCCCTCATCGCCTGTGCAGGTGCGAGGAATTAGCATGGATTATGGAAATGGCTGTGAACTATTTTTCGAAAACGTTCCGGGCAACTGCAACCTAAGCAGGTTGGAACTGCTTAGGGGTGAAGGTTCTTTTGTTGAAAGCGTATTCAGTTCAGCGGAGTTACGACAACTGATATATCTCCGATGGGAGAACTGTCCGATCTCCTCAATATCTTTCACAATTCCAAGGAATTTAAGAGTGTTATACATAGAGGGGGAAGAATTGAACACACTCTGGCAACATGAATCTCAGGCACCACTACAGTTGACGGAATTGTATATTGATGCTCCCCTTTCAGAGGTTCCACAGTCTATTGGTAAACTGAATCGGCTCGAAAGAATTGTCTTGAAAAATGGTTATTTTAACACTTTACCAAATGAATTCTATGATATGCATTCATTGAAACATATCACGTTACAAAACTGTAAACAAATGATGTTGCTGCCGGATTCAGTTGGGATCTTGACGGGCCTCCAGACACTCGATTTTTCCGGGTGCTCCAGCTTGAAGCAGCTCCCAGACTCGACGGGGCAGCTGACGGGCCTCAAGAGCCTCAACTTGGAATACTGCACCAGCCTGCAGGGGCTCCCAGACTCGGTGGGGCAGCTGACGGGCCTCCAGAAACTCGACTTGCAAGAGTGCACCAGCCTGCAGGGGCTCCCAGACTCGGTGGGGCAGCTGACGGGCCTCCAGAAACTCTACTTGAACGGGTGCTCCAGCCTGCAGGGGCTCCCAGACTCGGTGGGGCAGCTGATGGGCCTCCATACACTCCACTTGGAAAACTGCACCAGCTTACAGGGGCTCCCATACTCAGTCGAGAATTTAACGAGACTCAAACGGCTTAACTTGTCTGGGTGTTACAATTTACAGATGCTGCCCAATTTTCGGCATTTGAGCTCGTTGGAGGAGCTTTACTTGTCTGGATGTTCCAATTTACAGATGCTGCCCGATGTTCAGCATTTGAGCTCGCTGGTGAATCTTGATATGTCTCACTGTTCAAAACTGCAATGGGGTGCTGGAGTAGTCGAGTCCCTGCGCCATCGACTGGGAAATGGCTTCATCGAAGAAAGGTGTGAAGAAGGCAGCGAAAACAGTAATGAAAGAAAGTTGGGAAGAAGGCAGCGAAAACAGTAATGAATAAAGCTGCAGCGAGTTGAATAATATAAAAGAACTTCTTAAGATCAGATGGCCACGGTGCTCGCCACACGCCGCAAAGAGAGCTGTGTCATTAATCTTCATAGAGCTGTAGTCATAGGCAAAATGAATTACACAATGTACAGAATGCTCTACATTTTAGATCAGGTGGAGTAGTAAAATATACTGGTGCAAAATATATTGAGTTTATAGTGCACATATTCA

Fln Alignment:

Contig15126___DEGRLVDEVVKEVWRKVSKT--PLYVAEYATGLKEKIENVERMV--QQQSQKMRVVxxxxxxxxxxxxxxxEFFNRHRSNYDRCCFLSDVRETAAKSSLSSLQTPLLKDLAHLQDEQISDTDEGIGKLQKHLSSCPPCLIVLDDVDHIDQLDALFSPVKDTIQSSSLILVTSRKRDVLRSAGIIEDSIYPQTGLNQQHSRALFCSHAFDQSCPVPGFEQLVEEFLDFCHGLPLSLKVVGAAIRGEDSEFWKRELNQIRRILPEDIHSKLKISYDGLGKEEQEIFLDVACFFIGENRDTAIAIWNGSGWDGWLGLRNLENRCLLEIDSEECIRMHDHLRDLGRDVAEK-KHPLRLSRPNVNLLRTLSPSSPVQVRGISMDYGNGCELFFENVPGNCNLSRLELLRGEGSFVESVFSSAELRQLIYLRWENCPISSISFTIPR-NLRVLYIEGEELNTLWQHESQAPLQLTELYIDAPLSEVPQSIGKLNRLERIVLKNGYFNTLPNEFYDMHSLKHITLQNCKQMMLLPDSVGILTGLQTLDFSGCSSLKQLPDSTGQLTGLKSLNLEYCTSLQGLPDSVGQLTGLQKLDLQECTSLQGLPDSVGQLTGLQKLYLNGCSSLQGLPDSVGQLMGLHTLHLENCTSLQGLPYSVENLTRLKRLNLSGCYNLQMLP-NFRHLSSLEELYLSGCSNLQMLPD-VQHLSSLVNLDMSHCSKLQ
C0PQE2_______________DERQLVDKVVQRVLEKVPKVHPPLNVAKYPSGLDEKIQDVDRILSLQQQRKKARVVxxxxxxxxxxxxxxxKIYNREKSNYKRICLLRDVRS----SNLHSLQSRLLKEL-NQSSAQINDIDEGIEKLKTYSERA---LIVLDDVDDISQLDALFASLKDTIHVDSLILVTSRNKDVLTSSGITESSIYRLKGLNRKHSQELFCFHAFGQPHPVVGFEEVVEKFLDVCDGLPLSLKVLGALLHGKDLWYWKEQLGKTSTILPRKVRSTLEISFDALDKQEKEVFLDIACFFIGENRDT-IRIW-----DGWLNLENLKNRCLVEVDSENCLRMHDHLRDLGRDLAENSEYPRRIWRMTDSLLHNVSDQSPV--RGISMVHRNGSER-------SCNLSNCKLLKAESHFVEQVLSNGQLLPLIYLRWENYPKSSLPPSLPSMNLRVLHIQGKQLKTLWQHESQAPLQLRELYVNAPLSKVPESIGTLKYLEKIVLYNGSMTLLPDSVGHLTGLQTLDLIGCSTLQMLPDSVGNLTGLQKLDLSWCSTLQMLPDSVGNLTGLQTLALGWCSTLQTLPDSVGNLTGLQTLDLIECSTLQTLPDSVGNLTGLQTLYLSRCSTLQTLPDSVGNLTGLQTLYLSGCSTLQTLPDSVGNLTGLQTLYLSGCSTLQTLPDSVGNLTGLQTLNLDRCSTLQTLPDLVGNLKSLQTLDLDGCSTLQ

SNPs (tot: 67)

Position	A %	C %	G %	T %	Probability
108	33		66		1.0
112		33		66	1.0
117			33	66	1.0
451		33	66		0.997452
452		33		66	1.0
455		66		33	0.997452
598		20	80		0.995493
599		20	80		0.995493
606	40		60		1.0
644	20		80		0.995493
645	20		80		0.995493
651		80		20	0.995493
652	20	80			0.995493
653	20		60	20	0.99255
654		20		80	0.995493
655	20		20	60	0.99255
661	60	20		20	0.99255
666	40			60	1.0
667		20	20	60	0.99255
668		80		20	0.995493
670	20		80		0.995493
692	25	75			0.996473
695	25		75		0.996473
696	25			75	0.996473
712		25	75		0.996473
718	33	33		33	0.997753
722		33	66		1.0
723		33		66	0.997452
724	33	33	33		0.997753
876		33	33	33	0.997753
885		30		69	1.0
892		83		16	0.999991
906	66	33			1.0
916		36	63		1.0
917		63	36		1.0
918	63		36		1.0
925		27		72	1.0
931		45	54		1.0
934		70		30	1.0
938		10	90		0.90298
939	10			90	0.90298
940		20		80	0.999996
941	20			80	0.999996
943			90	10	0.90298
949		10		90	0.90298
956		70		30	1.0
985		11		88	0.923564
995			60	40	1.0
1010			25	75	0.996473
1054		75		25	0.996473
1107	33		66		0.997452
1118	66			33	0.997452
1122		33		66	0.997452
1143		33		66	1.0
1148		33	33	33	0.997753
1149		33		66	0.997452
1150		33		66	1.0
1151	33			66	1.0
1152	33			66	1.0
1153			33	66	1.0
2340		66	33		0.997452
2375	33			66	0.997452
2390		33		66	0.997452
2418	33		66		1.0
2437		80		20	0.995493
2474		75		25	0.996473
2487		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain