SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene15077

Length: 1635 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene15077 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; Nitrous oxide reductase, N-terminal; WD40-like; Quinonprotein alcohol dehydrogenase-like [Medicago truncatula]	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Blast2go	topless-related protein 3-like	-	-	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	primary shoot apical meristem specification	GO:0010072	Biological Process	0.0	71%
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	71%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Histidine phosphatase superfamily, clade-2	IPR000560	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	LisH dimerisation motif	IPR006594	-	-
Sma3	CTLH, C-terminal LisH motif	IPR006595	-	-
Sma3	LisH dimerisation motif, subgroup	IPR013720	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Cytochrome b5, heme-binding site	IPR018506	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NV83

Fln msg: Overlapping hits, possible frame ERROR between 534 and 533, STOP codon was not found. Distance to subject end: 221 aas, your sequence is longer than subject: 515 - 300

Fln protein: MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNMKYFDEKAQAGEWDEVERYLSGFTKVDDNRYSMKIFFEIRKHKYLEALDRQDRAKAVDILVKDLKVFSTFNEELYKEITQLLTLDNFRENEQLSKYGDTKSARTIMMSELxxIDRGQSLISRKAHLPKPKASRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHACGPPNGARTPTQPTASLGVLPKATTFTPIGPHGPFPSSSTATSGLASWMSNPNMVTSPQAPVAVGPSVPVPPNQATLLKRPRTPPGSSSVVDYQTADSEQLIKRLRPVSQSLDEATYPGPTLRVPWSTDDLPKTLARALNEPYPVTSIDFHPTQQTFLLVGTKNGEITLWEVGSREKLATRPFKIWDNANCSNHLEAAFVKDSSISINRVLWSPDGTLIGIAFTKHLVHTYTFQGLDLRQHLEIDAHVGGVNDLAFSHPNKQPCVVTCGDDKMIKVWDAVSGRKLYNFEGHEAPVYSVCPHHKENIQFIFST

Protein Length: 516

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATGCTGTTTGATTGAATGTTTTGTAACGGACTTGGATAGTTAATGCTAAAGTAAAAACTGGCATC_-_ATGTCATCTCTTAGTAGAGAATTGGTGTTCCTTATCCTACAGTTCTTGGATGAGGAAAAATTCAAGGAGTCTGTGCATAAGCTTGAGCAAGAGTCGGGTTTCTTTTTCAATATGAAATATTTTGATGAGAAGGCTCAGGCTGGGGAATGGGATGAAGTTGAGCGTTATCTCTCAGGCTTTACAAAGGTTGATGATAACCGGTATTCTATGAAAATATTCTTCGAGATCAGGAAACAtAAGTATTTGGAGGCCTTGGACAGACAAGACCGAGCTAAAGCGGTTGATATTTTGGTGAAAGATCTGAAGGTATTCTCAACATTTAATGAAGAACTATACAAGGAGATAACTCAGCTTCTAACACTGGATAACTTCAGAGAAAATGAACAACTGTCCAAATATGGTGATACAAAATCTGCCAGAACCATTATGATGTCGGAACTTxxxxxxATTGATAGAGGCCAATCCCTTATTTCGAGAAAAGCTCATTTACCCAAACCTAAAGCATCAAGGTTACGAACATTAATTAATCAAAGCTTGAACTGGCAACACCAACTTTGCAAAAATCCTAGACCAAACCCAGACATAAAGACATTGTTCACTGATCATGCATGTGGACCTCCTAATGGAGCCCGGACACCTACGCAGCCTACGGCTTCTCTGGGGGTACTACCCAAAGCAACCACATTTACACCAATTGGTCCCCATGGGCCTTTTCCATCATCTTCAACCGCTACTAGTGGCTTGGCAAGTTGGATGTCAAATCCCAACATGGTGACATCTCCCCAAGCTCCTGTTGCTGTGGGACCTAGTGTTCCAGTTCCACCTAATCAAGCTACTCTTCTAAAACGTCCCAGAACCCCTCCAGGCAGTTCGTCTGTGGTGGATTATCAAACTGCTGATTCTGAGCAATTAATCAAGCGCTTGCGTCCTGTATCCCAGTCCCTTGATGAGGCAACCTATCCAGGTCCTACTCTGCGAGTACCATGGTCAACAGATGACCTTCCAAAGACACTAGCTCGGGCACTTAATGAACCTTATCCTGTCACAAGCATAGATTTCCATCCTACTCAACAAACATTTTTACTAGTGGGCACCAAAAATGGAGAAATAACATTATGGGAGGTCGGTTCAAGAGAAAAGCTGGCTACAAGGCCCTTTAAAATTTGGGATAATGCAAATTGCTCCAATCATTTGGAGGCTGCATTTGTCAAAGATTCTTCAATTTCTATCAATCGAGTATTGTGGAGCCCTGATGGAACATTGATAGGTATTGCCTTTACAAAGCATCTTGTTCACACATACACTTTCCAAGGACTTGATCTGCGACAACATTTGGAGATTGATGCACATGTTGGTGGAGTGAATGACTTAGCATTTTCTCATCCAAATAAGCAACCTTGCGTTGTAACTTGCGGAGATGATAAGATGATTAAGGTCTGGGATGCTGTAAGTGGTCGCAAGCTTTATAACTTTGAGGGCCATGAGGCACCTGTCTATTCTGTTTGTCCTCATCACAAGGAAAATATCCAGTTTATATTTTCGACTGC

Fln Alignment:

Contig15077___MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNMKYFDEKAQAGEWDEVERYLSGFTKVDDNRYSMKIFFEIRKHKYLEALDRQDRAKAVDILVKDLKVFSTFNEELYKEITQLLTLDNFRENEQLSKYGDTKSARTIMMSELKKIDRGQSLISRKAHLPKPKASRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHACGPPNGARTPTQPTASLGVLPKATTFTPIGPHG-----PFPSSSTATSGLASWMSNPNMVTXXXXXXXXXXXXXXXPNQATLLKRPRTPPGSSSVVD
A9NV83_______________MTSLSRELVFLILQFLDEEKYKDTVHKLEQESMFFFNMKYFEDQVQAGEWEEVERYLSGFTKVEDNCYSMKLFFEIRKQKYLEALDKQDREKALEILVKDLKVFSSFNEELFKQITQLLPLDNFRENAQLSKYGDTKSARNILLLELKKLLEANPMFSDKLQFPALKAARLRTLINQSLNWQHQLCKNPRPNPDIKTLFIDHTCTPSNGCRVPMPSSNPLMGDIKGAAFPPFTPHSLNQPLPFQPTGGPASSLAGWMTNTNPAAAHAAGSAGPVSLAPTPNAVAFLKRPRTPSSNGPTID

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
768			80	20	0.995493
899	33		66		0.997452
901	66		33		0.997452
927	33			66	0.997452
1134		33	66		0.997452
1136	66	33			0.997452
1247		33		66	1.0
1268		66		33	0.997452
1314		66	33		0.997452
1488	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain