SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene15073

Length: 714 nt

Origin of reads: Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene15073

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cu2+-exporting ATPase [Arabidopsis thaliana] sp\|Q9SH30.2\|AHM7_ARATH RecName: Full=Putative copper-transporting ATPase 3 gb\|ACF95837.1\| heavy metal P-type ATPase [Arabidopsis thaliana] gb\|ACF95838.1\| heavy metal P-type ATPase [Arabidopsis thaliana] gb\|ACF9	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	51%
Blast2go	heavy metal p-type atpase	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	detoxification of copper ion	GO:0010273	Biological Process	83%
Blast2go	transmembrane transporter activity	GO:0022857	Molecular Function	83%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	83%

Source	InterPros	Term	Type	Identity
Sma3	Cof protein	IPR000150	-	-
Sma3	Flagellar motor protein MotA, conserved site	IPR000540	-	-
Sma3	ATPase, P-type, H+ transporting proton pump	IPR000695	-	-
Sma3		IPR001756	-	-
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3		IPR001877	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	Heavy metal-associated domain, HMA	IPR006121	-	-
Sma3	Heavy metal-associated domain, copper ion-binding	IPR006122	-	-
Sma3	ATPase, P type, cation/copper-transporter	IPR006403	-	-
Sma3	ATPase, P-type, heavy metal translocating	IPR006416	-	-
Sma3	ATPase, P-type, ATPase-associated domain	IPR008250	-	-
Sma3	Tachykinin/Neurokinin-like, conserved site	IPR013055	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Heavy-metal-associated, conserved site	IPR017969	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-

Full-Lengther Next Prediction

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
97			33	66	0.997452
99		66	33		0.997452
101		33	66		0.997452
102		33		66	0.997452
108	66		33		0.997452
408		20		80	0.995493
410		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain