SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene15068

Length: 931 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene15068 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF3252 domain containing protein	-	-	1.0e-17	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Blast2go	protein	-	-	0.0	61%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	0.0	61%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPA9

Fln msg:

Fln protein: MMASLLFPALLRASCTSTFPFPSPVTDEKHNFSGQTKDNAIWVPRLSPSAPYRLKVRAEKFNLWQLLGGRGLAKGEEGLREELKRQIPSGGQSPSLVGQEQNEEKMEPNNPAGTISTNWIGDDKAFEKELQGMTGGFPGGEKGLIKFLRDNPPPAKDGAAAEISSELGKLSKPRAAPQPPLQPGMIVIVKNPENPYHTLSGTVQKVADGNVGVLFEGGNLSKLVTFKLEDLERSKGPATSNPKSAILQTMDMP*

Protein Length: 255

Fln nts: AGAATTGGGTTTAAAAACACTCTAGCCTTTTATAATACCGATAGCTTCTGTTGTCAG_-_ATGATGGCTTCCCTGTTGTTTCCCGCCCTCTTAAGAGCTTCATGCACATCCACATTCCCGTTCCCATCGCCTGTAACTGATGAGAAGCACAATTTCTCAGGCCAAACAAAGGATAACGCCATTTGGGTTCCTAGACTTAGCCCTTCTGCGCCCTACAGACTGAAGGTCAGAGCAGAGAAATTCAATCTGTGGCAGTTACTGGGAGGCAGAGGGCTTGCAAAGGGTGAGGAAGGATTAAGAGAGGAGCTAAAGAGGCAAATCCCATCTGGTGGGCAGTCCCCAAGTTTAGTTGGACAGGAGCAAAATGAAGAAAAAATGGAACCCAACAATCCCGCAGGTACTATTTCTACTAACTGGATTGGTGATGATAAGGCCTTTGAAAAAGAATTACAGGGGATGACTGGTGGATTTCCTGGAGGTGAGAAGGGCTTAATCAAATTCCTTAGAGATAACCCCCCTCCCGCTAAGGATGGTGCTGCAGCTGAAATTTCTTCTGAATTGGGAAAGTTATCAAAGCCCAGGGCAGCACCGCAACCTCCCCTACAGCCTGGCATGATTGTGATTGTGAAGAATCCTGAGAATCCATACCACACGTTAAGCGGGACTGTGCAGAAGGTAGCTGATGGGAATGTTGGGGTGCTGTTTGAGGGTGGGAATCTGAGTAAGCTGGTGACTTTCAAGCTTGAGGACTTGGAACGGAGCAAGGGACCCGCCACGTCCAATCCTAAGTCTGCGATCCTGCAAACCATGGACATGCCATGA___GTTTTATCAATTCTTTCTCTCTGTAATTATCCTTTTAGCAGCATTTAAATTGTTTTCATTGTTAAGAAAATACTGTAATGGAATTTGATTGTTTCGTTTTGTATGAGCAATT

Fln Alignment:

Contig15068___MASLLFPALLRASCTSTFPFPSPVTDEKHNFSGQTKDNAIWVPRLSPSAPYRLKVRAEKFNLWQLLGGRGLAKGEEGLREELKRQIPSGGQSPSLVGQEQNEEKMEPNNPAGTISTNWIGDDKAFEKELQGMTGGFPGGEKGLIKFLRDNPPPAKDGAAAEISSELGKLSKPRAAPQPPLQPGMIVIVKNPENPYHTLSGTVQKVADGNVGVLFEGGNLSKLVTFKLEDLERSKGPATSNPKSAILQTMDMP
B8LPA9_______________MASVLFPSLLRASCTSTFQFPSPVTDEKHNFSGQTKDITIWVPRFSPSKPYRLRVRAEKFNLWQLLGGRGLAGGEEGLREELKRQIPSGGQFPSLAGQEQNGEKPELNNPAGTISANWIGADKTFEKELQGMTGGFPGGEEGLIIFLRDNPPPAKDGAQTRVSSDLGKLSKPRAASLPPLLPGMIVVVKNPENPYHMLSGTVQRVADGNVGVLFEGGNLGKLVTFKLEDLERSEGPPTSNPKSAILETMDIP

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
568		33		66	1.0
580		16		83	0.994512
581	16		83		0.994512
585	80	20			0.995493
586	80	20			0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain