SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene15056

Length: 374 nt

Origin of reads: Biogeco3 v1

UniGene Fasta

>sp_v2.0_unigene15056
TCCCATCTTGCTTGATGACTTTCAAACATGCAGCACGGTTGCTGGGGACTGTGGACTGTTTGTATTTGTGTCATTTCCGTTTTCTCATTACCTCTTTAATCTGAATGCAATGCGCGCCCCTTCCAGTCTCATTTGCGGTAATTCAATCCCAAATCCAATGTCTAATATGTTCAGGCTTCCTTCAACCAAAAGCTTCCTGAAATTACTAATACCATTTGGGCATTTCCCCTTACCTTCCGCTGCTCCATGTTATACTTCTCAAAAGACCAGTCTTCATCGTCATGCGGGCGGGTTTCACTTCAGTTCCATATCGATAAGTAATAAGATAAGGCAGAGCATTGCAGGAAGGAATATATCGTGGCACTACTCTATGC

Ace file of the UniGene sp_v2.0_unigene15056

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Blast2go	unknown [Picea sitchensis]	-	-	1.9999e-37	84%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L11 methyltransferase	IPR004498	-	0.0	-
Sma3	Ribosomal L11 methyltransferase, PrmA	IPR010456	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPF8

Fln msg: Distance to subject end: 326 aas, your sequence is shorter than subject: 88 - 414

Fln protein: MRAPSSLICGNSIPNPMSNMFRLPSTKSFLKLLIPFGHFPLPSAAPCYTSQKTSLHRHAGGFHFSSISISNKIRQSIAGRNISWHYSM

Protein Length: 89

Fln nts: TCCCATCTTGCTTGATGACTTTCAAACATGCAGCACGGTTGCTGGGGACTGTGGACTGTTTGTATTTGTGTCATTTCCGTTTTCTCATTACCTCTTTAATCTGAATGCA_-_ATGCGCGCCCCTTCCAGTCTCATTTGCGGTAATTCAATCCCAAATCCAATGTCTAATATGTTCAGGCTTCCTTCAACCAAAAGCTTCCTGAAATTACTAATACCATTTGGGCATTTCCCCTTACCTTCCGCTGCTCCATGTTATACTTCTCAAAAGACCAGTCTTCATCGTCATGCGGGCGGGTTTCACTTCAGTTCCATATCGATAAGTAATAAGATAAGGCAGAGCATTGCAGGAAGGAATATATCGTGGCACTACTCTATGC

Fln Alignment:

Contig15056___MRAPSSLICGNSIPNPMSNMFRLPSTKSFLKLLIPFGHFPLPSAAPCYTSQKTSLHRHAGGFHFSSISISNKIRQSIAGRNISWHYSM
B8LPF8_______________MRATPRVICNSSIPIPMSIMYRLPSTRSLLKSLIPLGHFPLPPAATCFTSQKTSLHRHAGGFHFNSVTIRNKIRQSIAGRNLSWQHCM

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
246	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain