SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene15031

Length: 1643 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene15031 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cinnamoyl-CoA reductase n=1 Tax=Camellia oleifera RepID=C3VPA5_9ERIC	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	cinnamoyl- reductase	-	-	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	0.0	81%
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	0.0	-
Sma3	NAD(P)-binding domain	IPR016040	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NU33

Fln msg:

Fln protein: MGSKETVCVTGASGFIGSWVVRLLLERGYSVRGTVQDLGNEKETRHLEAMEGAKERLELFQIDLLDYGSIETAINGSVGVFHLASPCIVEEVKNPQAQLLDPAVKGTMHVLQAAQKAKVKRLVLTSSISAIVPSPNWPADLPKDENCWTDLDYCKENGIWYPASKTLAEKAAWDFAKETGLDVVVINPGTVMGPILPPAINASMAMFLQLLQGGTEAYQNFYMGCVHVKDVAEGHILLYETPSASGRHLCVEATNHWSDFAEMVAKLYPEYKIHRFTEVTQPGLLRVQNPPKKFVDLGLVFTPMEQVIKDSVSSLKEKGFLN*

Protein Length: 324

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGTTTTTATGGTTCCACAAACAACAACATTCTACACTTATAATTTAGGCCATACTGCTCAGGACCAGCACCAGCATTGCAGCAGTTAAGATCAGTGTCAGGACTCGAGCATAAGTGTTTCAATTTTTTTAATCATTTCAAGTTTTCAGGCAGGTAATTACCAGTGTGAAA_-_ATGGGTAGCAAAGAAACTGTATGTGTGACCGGAGCTAGTGGATTCATCGGGTCATGGGTTGTTCGTTTGCTGCTAGAACGAGGTTACTCTGTGCGGGGAACTGTTCAAGATCTCGGAAATGAGAAGGAGACTAGGCACTTAGAGGCCATGGAAGGAGCCAAGGAGAGACTGGAATTGTTTCAAATAGACCTGCTGGATTATGGTTCTATCGAGACTGCCATTAATGGGTCTGTTGGTGTTTTCCATTTAGCGTCTCCTTGTATTGTCGAAGAAGTCAAGAACCCACAAGCCCAGCTTTTGGATCCTGCAGTTAAGGGTACCATGCATGTCTTGCAAGCAGCGCAGAAAGCCAAAGTGAAACGTCTGGTGTTAACCTCCTCAATCTCTGCAATTGTGCCCAGTCCGAACTGGCCTGCAGATTTACCGAAGGATGAGAACTGTTGGACTGATCTTGATTACTGCAAAGAAAATGGGATTTGGTATCCTGCATCAAAAACACTCGCTGAAAAAGCAGCTTGGGATTTTGCCAAAGAGACTGGTTTGGATGTGGTTGTTATCAATCCAGGAACTGTGATGGGACCGATTCTGCCTCCGGCCATTAATGCTAGTATGGCCATGTTTCTTCAGCTTCTTCAAGGTGGCACAGAAGCATATCAGAATTTTTACATGGGCTGTGTACATGTAAAAGATGTTGCGGAAGGACATATATTACTATATGAAACCCCATCAGCATCAGGAAGGCACCTTTGCGTTGAAGCAACAAACCATTGGAGTGACTTTGCTGAGATGGTGGCAAAACTATACCCTGAATATAAAATACACAGGTTCACTGAAGTGACACAACCTGGTTTGTTACGAGTTCAGAATCCTCCAAAGAAATTTGTTGACCTGGGCCTCGTTTTTACACCCATGGAGCAAGTAATTAAAGACTCAGTTTCTAGTTTAAAAGAAAAAGGCTTCCTGAATTGA___ATAATGACCATCTTTGTATGATCAGATCTTATTACAGTGGAAACGAAGACCATAGGACTTCTTAACCATCTGGAAAGGAAATATTTCTGAATTAGTTGATGTGGACCTGCTGAATGACGTTCACCATTTTCTATTCTATATACCCACTTGTGCGAAGTAGATACCATCTTGTTCCGGTTAATTGAAGTACATTTTCAAAATGCACTACTATGACATTTTATAGGATGTCTGAGTGTAAAATAATGGTACCGGTTGTTGCAAAGAATCTGATGTTTGGATGTATGGAACTATAAATAGATGTTATTTTCTGATCAAGAAGGCTTTCCTTACCAACTGATTTCATCTTCAGAAACTAAAAGCTCTTGGACTTTTGTAGATGGGGCTTGGTCATTGTAGTTTAAATGCATTATGTAGTGGCACAAAGTTGTTACGATGTTACTAGAATATGGATAGTGATATGGACTTGGATTTGGGGATAGT

Fln Alignment:

Contig15031___MGSKETVCVTGASGFIGSWVVRLLLERGYSVRGTVQDLGNEKETRHLEAMEGAKERLELFQIDLLDYGSIETAINGSVGVFHLASPCIVEEVKNPQAQLLDPAVKGTMHVLQAAQKAKVKRLVLTSSISAIVPSPNWPADLPKDENCWTDLDYCKENGIWYPASKTLAEKAAWDFAKETGLDVVVINPGTVMGPILPPAINASMAMFLQLLQGGTEAYQNFYMGCVHVKDVAEGHILLYETPSASGRHLCVEATNHWSDFAEMVAKLYPEYKIHRFTEVTQPGLLRVQNPPKKFVDLGLVFTPMEQVIKDSVSSLKEKGFLN
A9NU33_______________MGSKETVCVTGASGFIGSWIVRLLLERGYSVQGTVQDLGNEKETKHLEAMEGAKERLKLFQMDLLDYGSIEAAINGSVGVFHLASPNIIEEVENPQAQLLDPAVKGTKHVLQAAQKAKVKRLVLTSSTSAIIPSPNWPANVPKDENCWTDLDYCKENGIWYPVSKTLAEKTAGDFAKETGLDVVVINPGPVMGPILPPAINASMTMFRQLLQGGTEGYQNIYMGCVHVKDVAEGHILLYETSSASGRHLCIEAITHWSDFAEMVAKLYPEYKIHRFTEVTQPGLLRVQNASKKLMDLGLVFTPMEQVIKDSLSSLKEKGFLN

SNPs (tot: 81)

Position	A %	C %	G %	T %	Probability
332	12	87			0.992554
333	87		12		0.992554
336		87		12	0.992554
337	87		12		0.992554
342	12		87		0.992554
343		12	87		0.992554
344	12			87	0.992554
345	87		12		0.992554
346		12		87	0.992554
347	87	12			0.992554
348	12			87	0.992554
351	87			12	0.992554
352	87	12			0.992554
353	12			87	0.992554
354	87	12			0.992554
357	87	12			0.992554
358	87		12		0.992554
478			46	53	1.0
495	23		76		1.0
501	10			90	0.90298
503			10	70	0.999998
504			10	50	1.0
505	10			90	0.90298
512	83		16		0.999991
802		12		87	0.999964
906	10	90			0.90298
935		85	14		0.993533
936	14	85			0.993533
937		85	14		0.993533
938	83			16	0.994512
939	83		16		0.994512
940	16		83		0.994512
942	16			83	0.994512
945	16			83	0.994512
946	16			83	0.994512
947			16	83	0.994512
948			16	83	0.994512
967	16		83		0.994512
1113		22		77	0.999999
1274			60	40	1.0
1343		25	75		0.996473
1346	25	75			0.996473
1349			75	25	0.996473
1350	75	25			0.996473
1354			75	25	0.996473
1357	25	75			0.996473
1359	25	75			0.996473
1360	25	75			0.996473
1361			75	25	0.996473
1365	75	25			0.996473
1366		25	75		0.996473
1368		25	75		0.996473
1369		25		75	0.996473
1373	25	75			0.996473
1375		75	25		0.996473
1382			75	25	0.996473
1386		75		25	0.996473
1389	75	25			0.996473
1391	25	25	50		0.995533
1519		71		28	1.0
1533		33	66		1.0
1536		66	33		1.0
1554			66	33	1.0
1575		12	87		0.992554
1576		12	87		0.992554
1580	85	14			0.993533
1581	85	14			0.993533
1582	85	14			0.993533
1583		14		85	0.993533
1591		16	83		0.994512
1592		16		83	0.994512
1593	83	16			0.994512
1594		16	83		0.994512
1601		20	80		0.995493
1604		20		80	0.995493
1605		20		80	0.995493
1606		25	50	25	0.995533
1607	25		25	50	0.995533
1612			66	33	0.997452
1613		33	66		0.997452
1614	66	33			0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain