SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene15019

Length: 992 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene15019

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	protoporphyrin IX:Mg Chelatase [Antirrhinum majus]	-	-	73%
FL-Next	tr=Magnesium chelatase H subunit; Camellia sinensis (Tea).	-	-	72%
Blast2go	magnesium chelatase h subunit	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	85%
Blast2go	mitochondrion	GO:0005739	Cellular Component	85%
Blast2go	chloroplast	GO:0009507	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Exoribonuclease, phosphorolytic domain 1	IPR001247	-	-
Sma3	CobN/magnesium chelatase	IPR003672	-	-
Sma3	Magnesium-chelatase, subunit H	IPR011771	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: tr_plants

Fln subject: F8SPG3

Fln msg: Distance to subject end: 1136 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 228 - 1382

Fln protein: TFSENRESIKLTVRYLHFQPTAQKASNRTPRVTSAIVGNGLYTQGTPEVRRISPERNQGLPSVKIVYVVLEAQYQASVSAAVRNLNQKRKDAVFEIVGYLLEELRDQNTYNMFCKDLSDANIFIGSLIFVEELAQKVKTAVETERERLDAVLVFPSMPEVMRLNKLGSFSMSQLGQSKSPFFQMFKRKKKSAGFEESMLKLVRTLPKVLKYLPSDKAQDARAYIMSLQ

Protein Length: 229

Fln nts: AAAAACGCAGGTGCAGTGTTGTATTTGGGCTTTTTGTACCTATAGTGCTGTACATTTCCTCTGTGCAATTCTAGTTTTGAATTTAGCTTGTATGGAAATTGTTCAAAGCATATAGGAACAGAATTAATGCCATAGCCATTATTTCAAGACCAGCAGGCTGTAGCCGTTACATCGTTATGGCGTTTGTGGTATCATCTTCCTTCACATCCCCCAGTTTCAAGTTTGATCCTCTTCAACAAACTGGACGTCCATTATTCCATACAGTGCAGAAACCCTTTGAAGGTCTTAGACTTGCGAGGAATCTAGACATTCTCGGAAAACAGGGAGAGTATCAAACTCACAGTCAGGTATCTACATTTCCAGCCGACAGCTCAAAAAGCTAGCAACAGAACTCCAAGGGTGACCTCTGCAATTGTTGGAAATGGTTTATACACACAAGGGACACCAGAGGTGAGACGAATTAGTCCAGAAAGAAATCAGGGTCTGCCCAGTGTGAAAATAGTCTATGTGGTTCTTGAAGCTCAATACCAGGCTTCTGTAAGTGCAGCAGTCCGGAATCTTAACCAGAAAAGAAAAGATGCCGTATTTGAGATTGTTGGGTACCTTTTAGAGGAGCTAAGGGACCAAAATACCTACAACATGTTCTGTAAAGATCTCTCTGATGCCAATATATTCATCGGATCTCTGATATTTGTCGAGGAACTTGCTCAAAAGGTAAAGACTGCAGTGGAGACTGAAAGAGAAAGACTGGATGCTGTCTTGGTTTTCCCTTCAATGCCAGAGGTAATGAGACTAAATAAACTGGGTTCTTTTAGTATGTCTCAGTTGGGCCAATCCAAAAGCCCTTTCTTTCAAATGTTTAAAAGAAAGAAGAAGTCAGCGGGCTTTGAGGAAAGCATGCTTAAGCTTGTTAGGACCCTACCCAAAGTCCTCAAGTATTTGCCAAGCGACAAGGCTCAGGATGCTAGAGCCTATATCATGAGTTTGCAGTT

Fln Alignment:

Contig15019___SENRESIKLTVRYLH-FQPTAQKASN---RTPRVTSAIVGNGLYTQGTPEVRRISPERNQGLPSVKIVYVVLEAQYQASVSAAVRNLNQKRKDAVFEIVGYLLEELRDQNTYNMFCKDLSDANIFIGSLIFVEELAQKVKTAVETERERLDAVLVFPSMPEVMRLNKLGSFSMSQLGQSKSPFFQMFKRKKKSAGFEESMLKLVRTLPKVLKYLPSDKAQDARAYIMSLQ
F8SPG3_______________TDQLSSISQKHYFLHSFLPKKTNQTNPKSSSMRVKCAAIGNGLFTQTSPEVRRIVPDNIQGLPTVKVVYVVLEAQYQSSLSAAVRTLNKNGNFASFEVVGYLVEELRDENTYKSFCKDLEDANVFIGSLIFVEELALKIKTAVEKERDRLDAVLVFPSMPEVMRLNKLGSFSMSQLGQSKSPFFQLFKRKKQSAGFAESMLKLVRTLPKVLKYLPSDKAQDARLYILSLQ

SNPs (tot: 5)

Position	A %	G %	T %	Probability
573	33	66		0.997452
574	66		33	0.997452
575	66	33		0.997452
576	66		33	0.997452
797	80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain