SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene14982

Length: 231 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene14982
GCAGGTTTCCTCCTGTTATCTTCTATACACCCAAGGAAATTGGAGGACTTGGAATGCTATCTATGGGCCATATTTTAATCCCACAAAGTGACCTACGTTATAGTCAACAGACAGATGTTGGAGTTACACACTTCCGCAGTGGTATGAGCCATGAGGAAGATCAACTTATTCCAAATCTGTATCGATACATACAGCCCTGGGAGAGTGAATTCATAGACTCTCAACGTGTTT

Ace file of the UniGene sp_v2.0_unigene14982

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pre-mRNA-processing-splicing factor [Arabidopsis thaliana] gb\|AAD55467.1\|AC009322_7 Putative splicing factor Prp8 [Arabidopsis thaliana] gb\|AEE36353.1\| Pre-mRNA-processing-splicing factor [Arabidopsis thaliana]	-	-	5.0e-38	98%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	100%
Blast2go	pre-mrna-processing-splicing factor	-	-	4.2039e-45	100%

Source	ECs	Term	Type	e value	Identity
Blast2go	Sucrose synthase.	EC:2.4.1.13	-	4.2039e-45	100%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		4.2039e-45	100%
Blast2go	Metabolic pathways	01100		4.2039e-45	100%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to hypoxia	GO:0001666	Biological Process	4.2039e-45	100%
Blast2go	starch metabolic process	GO:0005982	Biological Process	4.2039e-45	100%
Blast2go	seed maturation	GO:0010431	Biological Process	4.2039e-45	100%
Blast2go	sucrose metabolic process	GO:0005985	Biological Process	4.2039e-45	100%
Blast2go	sucrose synthase activity	GO:0016157	Molecular Function	4.2039e-45	100%
Blast2go	cytosol	GO:0005829	Cellular Component	4.2039e-45	100%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	4.2039e-45	100%
Blast2go	chloroplast	GO:0009507	Cellular Component	4.2039e-45	100%
Blast2go	membrane	GO:0016020	Cellular Component	4.2039e-45	100%

Source	InterPros	Term	Type	Identity
Sma3	JAB1/Mov34/MPN/PAD-1	IPR000555	-	-
Sma3	FAS1 domain	IPR000782	-	-
Sma3	Pre-mRNA-processing-splicing factor 8	IPR012591	-	-
Sma3	PROCN	IPR012592	-	-
Sma3	PRO, C-terminal	IPR012984	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5C8P3

Fln msg: Distance to subject end: 926 aas, your sequence is shorter than subject: 76 - 2294

Fln protein: RFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSQQTDVGVTHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRV

Protein Length: 77

Fln nts: GCAGGTTTCCTCCTGTTATCTTCTATACACCCAAGGAAATTGGAGGACTTGGAATGCTATCTATGGGCCATATTTTAATCCCACAAAGTGACCTACGTTATAGTCAACAGACAGATGTTGGAGTTACACACTTCCGCAGTGGTATGAGCCATGAGGAAGATCAACTTATTCCAAATCTGTATCGATACATACAGCCCTGGGAGAGTGAATTCATAGACTCTCAACGTGTTT

Fln Alignment:

Contig14982___RFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSQQTDVGVTHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRV
A5C8P3_______________RFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSQQTDVGVTHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRV

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
220		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain