SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene14944

Length: 2768 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene14944
CGTCGTGACCTTGGCTGTCACTCAGTAATTTACTTTTCATAGAACTTTTGTGATGTTCGTGTTTTCATGGAATTTTTGTGGATAGTGATAATCTAGAGCCACTGAAACTACTTTTCTCAATCTCAATCTTCCCTGTGTCATTCTCACATCACGCTCTCTAGTTTCCTCGTTTGTGAGTTTTAAAGAATATGTGAAGCCATCCAGAAGATTCTGGTTCAACTCTAATGGTATCCATCTTAAACAGTTCAACCACATTTTTTCAATGTTCTACCAGCAGAAACGTTGACCTTTCACAACCGTTGAATTTTCCATGGAAGGAACGCGGTATTAAATATAGAAGTGATGAGAAGAGGGGCTAGAGGGGCGGCTCATGGTTATACTAAACAAGGAAATATATATTTTTAGATAAGTCCTCCTTTCCCGTCGCTTGCGGACACGGCTCAAATTCATCCAAGTTTCCTCGCTGAAACATAATAATCTCATCCCTTGATTTGGTGGAGCTCCGAGGCGATAAAAGGGGGCGAGCCAGCCAGAGATCGACAGGATTGCCTGTACCAATTTCGCGGTTTCCATTGTTTAAGATAAAATTTTTCGACATTGAAGATAAGAGAAATTGTCAATTTTACGTTGCATTTACCCATCAACGGTGAGCAGTTGCCAAAAGGCATTCGTGTTTGTTCGACGGAAATCCAGAGAAAATGGATTCGCTTATGTTATCCTGCCCTGCTTTGAAGTCTGCTCATTGGAGTGGAAAGAATTCTGCCCCAGTTTGTCAAGGGTTACTGCCTGTGGAGCTATCTGCATCGCATAATAGGATTTTGCCCCCAATAGCTCTGGGTTTTAAGAGGACCTCAGCATTTCCAAGAATTAGATGTGTTGATGGAAGTGGGGCTCTGAAAAGCATCGGAGAAAGTGATGACTCCAATCTTCAGGTGGGAAGTTTGGTCATGCCTAATGGTGCCCGTGTGGTTGGTTTAGGAAAAAATTCGGTCACACCAACTGAACTAGAGACAGACACAATTGCATTTGGTACTGTAGTTGCGGAGATCACCCCTGAAACTGATAATCAAGTTTTCATTAGTGAAGATGATGTCGATCTTGATTGCCCATCAAAGGGGTTCTGCTCTATCCCTGATGCCATTGAAGCCATTCGCCAAGGCAAGTTTGTCATCGCGGTGGATGATGAAGACAGGGAGAATGAAGGGGATCTTATAATGGCAGCATCATCAGTAACCCCTGAAGCAATGGCCTTCATTGTGAGGCATGGTACTGGGATTGTATGTGTTGCAATGAAGGAAGAAGACCTAAGAAGGCTTGAATTGCCACTTATGGTACCGGACAAAGAAAATGAAGAGAAGCTTCTTACTGCATTTACAATATCTGTGGATGCAAAAGAGGGTACAACTACTGGGGTATCAGCAACAGACAGGGCGAATACAATTTTGGCCCTTGCATCTCCAGATTCTAAACCTGGTGATTTTAGGAGACCTGGTCATATCTTCCCTCTGAAATACAGAGAGGGAGGAGTCCTCAAGAGAGCTGGTCATACAGAAGCATCTGCGGATCTGGCAACATTGGCAGGATTACATCCTGCTGCAGTACTTTGTGAGATAGTTGATAATGATGGTTCAATGGCTCGCTTGCCAAGGTTGCGAGAATTTGCAAAGGAGCATAATTTACCACTTATATCTATTGCAGATCTTGTTAGGTACAGGAGGAAACGTGAGAAGTTGGTGGAACGAAGTGCTATTGCTAGGCTGCCTACAATGTGGGGACCATTTCAGGCATATTGCTACCGTTCAAAGTTGGATGGCATTGAACATGTTGCCATGGTTAAGGGTAACATTGGTGATGGACTAGATGTACTGGTGAGGGTTCATTCTGAATGTCTTACGGGAGATATCTTTGGGTCGGCTAGGTGTGATTGTGGAAACCAACTTGCACTAGCTATGCAGCAGATTGAGCTTGCTGGGAGAGGAGTTTTGGTGTACTTGCGTGGTCACGAGGGTAGGGGTATTGGTTTGGGACACAAACTTCGAGCTTACAATCTCCAAGATGAAGGCCGTGATACTGTTGAAGCTAATGTGGAGCTTGGACTGCCTGTTGACTCCCGTGAATATGGTATTGGAGCACAGATCCTGAGGGACGTAGGCGTAAGAACTATGAGGTTGATGACAAACAATCCTGCTAAGTATGTTGGTCTCAGAGGATATGGGTTGAAAGTTGTTGGTCGGGTTCCTGTTCTTTCACCAATAACTCAAGAAAACAAAAGATATTTGGAAACAAAGCGCTCCAAAATGGGCCACATTTATGGGTTAGATCTATCTGGGCCATTTTCTGCAATCCTTAACAGTAATATTGCTGACATCAATTCCTCAAAATCTTTATCATGATCCCATTGCAGATTGGATTTTACTGTTATCGCATTCGATGATGGTCATTTTGCCCCCTGTTCTTTGGATTTACTTGAGGCGTATTCATGCCTTATGTTGGCACGGCTGACTATCGTTTTGCTGTTTTATTTTTTTCTGAGTTGTCTATTCTTTCCTCGACGAATGTCAATACATCCAAAGAAATGGTAGCCATATTTGTCAAGAAGGAATCGGGCACAATTGTATATTGTTATTTTCTCTAATATAATTCATTTCTGGCAAGAGTCCCTTTATCCAGGGTATGGCAGCAGGAGATTTATCCATTATATTTGTATTTGGAGTTGGGACATGTAGAAAGTCCTTATTTTGCTGTCACGGGAATTGTTAAAATGATGT

Ace file of the UniGene sp_v2.0_unigene14944

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	GTP cyclohydrolase-2 [Arabidopsis thaliana] sp\|P47924.2\|RIBBA_ARATH RecName: Full=Riboflavin biosynthesis protein ribBA, chloroplastic; Includes: RecName: Full=3,4-dihydroxy-2-butanone 4-phosphate synthase; Short=DHBP synthase; Includes: RecName: Full=GTP	-	-	74%
FL-Next	sp=Riboflavin biosynthesis protein ribBA, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	74%
Blast2go	riboflavin biosynthesis protein chloroplastic-like	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	GTP cyclohydrolase II.	EC:3.5.4.25	-	0.0	83%

Source	KEGGs	Term	Type	Identity
Blast2go	Riboflavin metabolism	00740		83%
Blast2go	Metabolic pathways	01100		83%
Blast2go	3,4-dihydroxy-2-butanone-4-phosphate synthase.	EC:4.1.99.12	-	83%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Riboflavin metabolism	00740		0.0	83%
Blast2go	Metabolic pathways	01100		0.0	83%

Source	GOs	Term	Type	Identity
Blast2go	riboflavin biosynthetic process	GO:0009231	Biological Process	83%
Blast2go	GTP cyclohydrolase II activity	GO:0003935	Molecular Function	83%
Blast2go	3,4-dihydroxy-2-butanone-4-phosphate synthase activity	GO:0008686	Molecular Function	83%
Blast2go	chloroplast	GO:0009507	Cellular Component	83%
Blast2go	membrane	GO:0016020	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB	IPR000422	-	-
Sma3	GTP cyclohydrolase II, RibA	IPR000926	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Riboflavin biosynthesis protein RibBA	IPR016299	-	-
Sma3	DHBP synthase RibB-like alpha/beta domain	IPR017945	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: P47924

Fln msg:

Fln protein: MDSLMLSCPALKSAHWSGKNSAPVCQGLLPVELSASHNRILPPIALGFKRTSAFPRIRCVDGSGALKSIGESDDSNLQVGSLVMPNGARVVGLGKNSVTPTELETDTIAFGTVVAEITPETDNQVFISEDDVDLDCPSKGFCSIPDAIEAIRQGKFVIAVDDEDRENEGDLIMAASSVTPEAMAFIVRHGTGIVCVAMKEEDLRRLELPLMVPDKENEEKLLTAFTISVDAKEGTTTGVSATDRANTILALASPDSKPGDFRRPGHIFPLKYREGGVLKRAGHTEASADLATLAGLHPAAVLCEIVDNDGSMARLPRLREFAKEHNLPLISIADLVRYRRKREKLVERSAIARLPTMWGPFQAYCYRSKLDGIEHVAMVKGNIGDGLDVLVRVHSECLTGDIFGSARCDCGNQLALAMQQIELAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDEGRDTVEANVELGLPVDSREYGIGAQILRDVGVRTMRLMTNNPAKYVGLRGYGLKVVGRVPVLSPITQENKRYLETKRSKMGHIYGLDLSGPFSAILNSNIADINSSKSLS*

Protein Length: 566

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTAATTTACTTTTCATAGAACTTTTGTGATGTTCGTGTTTTCATGGAATTTTTGTGGATAGTGATAATCTAGAGCCACTGAAACTACTTTTCTCAATCTCAATCTTCCCTGTGTCATTCTCACATCACGCTCTCTAGTTTCCTCGTTTGTGAGTTTTAAAGAATATGTGAAGCCATCCAGAAGATTCTGGTTCAACTCTAATGGTATCCATCTTAAACAGTTCAACCACATTTTTTCAATGTTCTACCAGCAGAAACGTTGACCTTTCACAACCGTTGAATTTTCCATGGAAGGAACGCGGTATTAAATATAGAAGTGATGAGAAGAGGGGCTAGAGGGGCGGCTCATGGTTATACTAAACAAGGAAATATATATTTTTAGATAAGTCCTCCTTTCCCGTCGCTTGCGGACACGGCTCAAATTCATCCAAGTTTCCTCGCTGAAACATAATAATCTCATCCCTTGATTTGGTGGAGCTCCGAGGCGATAAAAGGGGGCGAGCCAGCCAGAGATCGACAGGATTGCCTGTACCAATTTCGCGGTTTCCATTGTTTAAGATAAAATTTTTCGACATTGAAGATAAGAGAAATTGTCAATTTTACGTTGCATTTACCCATCAACGGTGAGCAGTTGCCAAAAGGCATTCGTGTTTGTTCGACGGAAATCCAGAGAAA_-_ATGGATTCGCTTATGTTATCCTGCCCTGCTTTGAAGTCTGCTCATTGGAGTGGAAAGAATTCTGCCCCAGTTTGTCAAGGGTTACTGCCTGTGGAGCTATCTGCATCGCATAATAGGATTTTGCCCCCAATAGCTCTGGGTTTTAAGAGGACCTCAGCATTTCCAAGAATTAGATGTGTTGATGGAAGTGGGGCTCTGAAAAGCATCGGAGAAAGTGATGACTCCAATCTTCAGGTGGGAAGTTTGGTCATGCCTAATGGTGCCCGTGTGGTTGGTTTAGGAAAAAATTCGGTCACACCAACTGAACTAGAGACAGACACAATTGCATTTGGTACTGTAGTTGCGGAGATCACCCCTGAAACTGATAATCAAGTTTTCATTAGTGAAGATGATGTCGATCTTGATTGCCCATCAAAGGGGTTCTGCTCTATCCCTGATGCCATTGAAGCCATTCGCCAAGGCAAGTTTGTCATCGCGGTGGATGATGAAGACAGGGAGAATGAAGGGGATCTTATAATGGCAGCATCATCAGTAACCCCTGAAGCAATGGCCTTCATTGTGAGGCATGGTACTGGGATTGTATGTGTTGCAATGAAGGAAGAAGACCTAAGAAGGCTTGAATTGCCACTTATGGTACCGGACAAAGAAAATGAAGAGAAGCTTCTTACTGCATTTACAATATCTGTGGATGCAAAAGAGGGTACAACTACTGGGGTATCAGCAACAGACAGGGCGAATACAATTTTGGCCCTTGCATCTCCAGATTCTAAACCTGGTGATTTTAGGAGACCTGGTCATATCTTCCCTCTGAAATACAGAGAGGGAGGAGTCCTCAAGAGAGCTGGTCATACAGAAGCATCTGCGGATCTGGCAACATTGGCAGGATTACATCCTGCTGCAGTACTTTGTGAGATAGTTGATAATGATGGTTCAATGGCTCGCTTGCCAAGGTTGCGAGAATTTGCAAAGGAGCATAATTTACCACTTATATCTATTGCAGATCTTGTTAGGTACAGGAGGAAACGTGAGAAGTTGGTGGAACGAAGTGCTATTGCTAGGCTGCCTACAATGTGGGGACCATTTCAGGCATATTGCTACCGTTCAAAGTTGGATGGCATTGAACATGTTGCCATGGTTAAGGGTAACATTGGTGATGGACTAGATGTACTGGTGAGGGTTCATTCTGAATGTCTTACGGGAGATATCTTTGGGTCGGCTAGGTGTGATTGTGGAAACCAACTTGCACTAGCTATGCAGCAGATTGAGCTTGCTGGGAGAGGAGTTTTGGTGTACTTGCGTGGTCACGAGGGTAGGGGTATTGGTTTGGGACACAAACTTCGAGCTTACAATCTCCAAGATGAAGGCCGTGATACTGTTGAAGCTAATGTGGAGCTTGGACTGCCTGTTGACTCCCGTGAATATGGTATTGGAGCACAGATCCTGAGGGACGTAGGCGTAAGAACTATGAGGTTGATGACAAACAATCCTGCTAAGTATGTTGGTCTCAGAGGATATGGGTTGAAAGTTGTTGGTCGGGTTCCTGTTCTTTCACCAATAACTCAAGAAAACAAAAGATATTTGGAAACAAAGCGCTCCAAAATGGGCCACATTTATGGGTTAGATCTATCTGGGCCATTTTCTGCAATCCTTAACAGTAATATTGCTGACATCAATTCCTCAAAATCTTTATCATGA___TCCCATTGCAGATTGGATTTTACTGTTATCGCATTCGATGATGGTCATTTTGCCCCCTGTTCTTTGGATTTACTTGAGGCGTATTCATGCCTTATGTTGGCACGGCTGACTATCGTTTTGCTGTTTTATTTTTTTCTGAGTTGTCTATTCTTTCCTCGACGAATGTCAATACATCCAAAGAAATGGTAGCCATATTTGTCAAGAAGGAATCGGGCACAATTGTATATTGTTATTTTCTCTAATATAATTCATTTCTGGCAAGAGTCCCTTTATCCAGGGTATGGCAGCAGGAGATTTATCCATTATATTTGTATTTGGAGTTGGGACATGTAGAAAGTCCTTATTTTGCTGTCACGGGAATTGTTAAAATGATGT

Fln Alignment:

Contig14944___ESDDSNLQVGSLVMPNGARVVGLGKNSVTPTELETDTIAFGTVVAEITPETDNQVFISEDDVDLDCPSKGFCSIPDAIEAIRQGKFVIAVDDEDRENEGDLIMAASSVTPEAMAFIVRHGTGIVCVAMKEEDLRRLELPLMVPDKENEEKLLTAFTISVDAKEGTTTGVSATDRANTILALASPDSKPGDFRRPGHIFPLKYREGGVLKRAGHTEASADLATLAGLHPAAVLCEIVDNDGSMARLPRLREFAKEHNLPLISIADLVRYRRKREKLVERSAIARLPTMWGPFQAYCYRSKLDGIEHVAMVKGNIGDGLDVLVRVHSECLTGDIFGSARCDCGNQLALAMQQIELAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDEGRDTVEANVELGLPVDSREYGIGAQILRDVGVRTMRLMTNNPAKYVGLRGYGLKVVGRVPVLSPITQENKRYLETKRSKMGHIYGLDLSG
P47924_______________EDDLLSFTNGNTPLSNGSLI-----DDRTEEPLEADSVSLGTLAADSAPAPANGFVAEDDDFELDLPTPGFSSIPEAIEDIRQGKLVVVVDDEDRENEGDLVMAAQLATPEAMAFIVRHGTGIVCVSMKEDDLERLHLPLMVNQKENEEKLSTAFTVTVDAKHGTTTGVSARDRATTILSLASRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLTVLAGLDPVGVLCEIVDDDGSMARLPKLREFAAENNLKVVSIADLIRYRRKRDKLVERASAARIPTMWGPFTAYCYRSILDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALSMQQIEATGRGVLVYLRGHEGRGIGLGHKLRAYNLQDAGRDTVEANEELGLPVDSREYGIGAQIIRDLGVRTMKLMTNNPAKYVGLKGYGLAIVGRVPLLSLITKENKRYLETKRTKMGHMYGLKFKG

SNPs (tot: 62)

Position	A %	C %	G %	T %	Probability
519		25	75		0.996473
521			75	25	0.996473
522		25	75		0.996473
524		75		25	0.996473
527		25	75		0.996473
529		75		25	0.996473
530	75			25	0.996473
532		75	25		0.996473
534	75			25	0.996473
536	75			25	0.996473
537		25	75		0.996473
646	80		20		0.995493
647	80			20	0.995493
656	80	20			0.995493
657			80	20	0.995493
659			20	80	0.995493
662		80		20	0.995493
663	80		20		0.995493
664	80			20	0.995493
665	80	20			0.995493
667		20	80		0.995493
668			80	20	0.995493
1245	85		14		0.993533
1332	11			88	0.923564
1335			88	11	0.923564
1348			87	12	0.992554
1349	87			12	0.992554
1447		14		85	0.993533
1448			14	85	0.993533
1451	14		85		0.993533
1454		85		14	0.993533
1456			14	85	0.993533
1459	85			14	0.993533
1463	14			85	0.993533
1488		25		75	1.0
1603			87	12	0.992554
1674	36		63		1.0
1964	87		12		0.992554
1965			87	12	0.992554
1966	87	12			0.992554
1967			12	87	0.992554
1971		12	87		0.992554
1979			85	14	0.993533
1980		14	85		0.993533
1982		28	71		1.0
1983	85			14	0.993533
1984		14	71	14	0.984337
1985			71	14	0.984337
2069	25		75		1.0
2071	25	75			1.0
2072			75	25	1.0
2083	16		83		0.994512
2084	83	16			0.994512
2086			87	12	0.992554
2087		87		12	0.992554
2099	12			87	0.992554
2103	87		12		0.992554
2196		16		83	0.994512
2297		83		16	0.994512
2658	14		85		0.993533
2660		85	14		0.993533
2662	83	16			0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain