SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene14882

Length: 1160 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene14882 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative cyclophilin (70.8 kD) (cyp-15) [Oryza sativa Japonica Group]	-	-	88%
FL-Next	sp=Peptidyl-prolyl cis-trans isomerase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	59%
Blast2go	peptidylprolyl isomerase domain and wd repeat-containing protein 1	-	-	94%

Source	GOs	Term	Type	Identity
Blast2go	sepal formation	GO:0048453	Biological Process	94%
Blast2go	leaf formation	GO:0010338	Biological Process	94%
Blast2go	carpel development	GO:0048440	Biological Process	94%
Blast2go	meristem structural organization	GO:0009933	Biological Process	94%
Blast2go	leaf shaping	GO:0010358	Biological Process	94%
Blast2go	regulation of flower development	GO:0009909	Biological Process	94%
Blast2go	leaf vascular tissue pattern formation	GO:0010305	Biological Process	94%
Blast2go	stamen development	GO:0048443	Biological Process	94%
Blast2go	regulation of root meristem growth	GO:0010082	Biological Process	94%
Blast2go	regulation of histone methylation	GO:0031060	Biological Process	94%
Blast2go	histone binding	GO:0042393	Molecular Function	94%
Blast2go	chromatin binding	GO:0003682	Molecular Function	94%
Blast2go	nucleus	GO:0005634	Cellular Component	94%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain	IPR001179	-	-
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain	IPR002130	-	-
Sma3	U box domain	IPR003613	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNI6

Fln msg: your sequence is longer than subject: 307 - 163

Fln protein: MAVEKEIEKTENVPQPNAVFDDSCNFLLYTTLLGIKIVNLHTNKVARILGKVENNERFLRIALYQGGSGSKKVKRVPTAAGNVNENREPFVDPTVLCCAFKKHRIYLFSRREPVEPEDATKGRDVFNEKPPPEELMAVSDIGKSVTTSLPDNVILHTTLGDIHLRLYPEECPKTVENFTTHCRNGYYDNLIFHRVIKGFMVQTGDPLGDGTGGQSIWGNEFEDEFHKSLRHDRPFTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQGIEKVKTDKNDKPYQDIKILNVTVPKS*

Protein Length: 308

Fln nts: ACAGGGAAATTAAGACGGACATATGATGAGTCTCTTGAGGTTGCACAAGACCTACAGAGAAGTGATGCTCCATTGTATCGCTTGGATGCAATAGATTTTGGACGACGA_-_ATGGCTGTGGAGAAGGAAATAGAGAAAACAGAAAATGTACCACAACCAAATGCAGTTTTCGATGATAGCTGTAATTTTCTGCTTTATACAACGCTCTTGGGTATAAAGATTGTAAATCTGCATACAAATAAAGTGGCAAGAATCCTTGGGAAGGTAGAAAACAATGAAAGATTTTTGCGAATAGCTTTATACCAGGGGGGGAGTGGCAGCAAAAAGGTAAAGAGAGTGCCCACGGCTGCTGGAAATGTCAATGAGAACCGGGAGCCATTTGTGGACCCTACTGTCCTGTGTTGTGCATTCAAAAAGCATCGAATTTATCTTTTCAGCCGGAGGGAGCCAGTGGAACCTGAAGATGCTACAAAAGGAAGGGATGTTTTCAATGAAAAACCACCTCCAGAAGAGCTCATGGCAGTGTCAGATATTGGCAAGTCTGTGACAACATCTCTCCCTGACAACGTGATTTTGCATACTACGTTGGGAGATATACACCTGCGCTTATATCCAGAGGAGTGTCCTAAAACGGTTGAGAACTTCACTACACATTGCAGAAATGGTTATTATGATAATCTCATTTTCCACCGAGTTATCAAAGGCTTCATGGTTCAAACAGGTGATCCTCTTGGAGATGGTACTGGGGGCCAGTCTATCTGGGGAAATGAGTTTGAGGATGAATTTCATAAAAGTTTACGACATGATCGGCCATTTACATTGTCAATGGCAAATGCTGGTCCAAATACAAATGGCTCTCAATTCTTTATCACAACTGTAGCTACTCCATGGCTAGACAATAAGCATACAGTGTTTGGACGAGTTGTGAAGGGAATGGATGTTGTGCAGGGAATAGAGAAAGTAAAGACTGATAAGAACGATAAGCCATACCAAGATATAAAGATTTTGAATGTGACTGTTCCAAAGTCATAG___CTAATGCACTACAGGTGCAATCTGTGATCGATCTTGTTTGGACCTCGGAGAACTGTGCTCATATTATGGAGCAATTGGCAAGTGCCAAGTATCCACCACCTATCGAAAAGTCCAATGCCATGTCACGCTCG

Fln Alignment:

Contig14882___PDNVILHTTLGDIHLRLYPEECPKTVENFTTHCRNGYYDNLIFHRVIKGFMVQTGDPLGDGTGGQSIWGNEFEDEFHKSLRHDRPFTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQGIEKVKTDKNDKPYQDIKILNVTV
A9NNI6_______________PPEVTLETSMGPVAVELYHKHAPKTCRNFLELSRRGYYNNVKFHRVIKDFMVQGGDPTGTGRGGESIYGPRFEDEITRDLKHTGAGILSMANAGPNTNGSQFFISLAPTPWLDEKHTIFGRVCKGMDVVKRLGNVQTDKNDRPIHDVKILRTTV

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
700		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain