SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene14832

Length: 806 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene14832

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative zinc finger protein n=2 Tax=Oryza sativa Japonica Group RepID=Q6L4V6_ORYSJ	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	ribosomal protein l11 methyltransferase	-	-	70%

Source	InterPros	Term	Type	Identity
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Ribosomal protein L11 methyltransferase	IPR004498	-	-
Sma3	Ribosomal L11 methyltransferase, PrmA	IPR010456	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
171	66		33		0.997452
230			80	20	0.995493
231	80			20	0.995493
232	80		20		0.995493
235	20		80		0.995493
236			80	20	0.995493
315		40		60	1.0
348		75		25	0.996473
378		80		20	0.995493
460	40	60			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain