SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene14801

Length: 2590 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene14801
GCTGCATCGGGTGATGCTAGTGGCGAGGCATCTGGCAGTACAAGAGATCTTTCAATGGTGCTGGATGCTTTACTCAAAACAGAATCACGCACTGTGTTGATGGATATTGCAGATAAGAACGGGCTGCAGTTGCTTCATAATTTGATTAAACAACACAGAAAAGATTTCAATAAAACCCCTATTATTCGCAAACTTGTGAAGATTTTGCATAATTTTGCAGATAAGAAAGTCATCACATCAGAACAAATCAAACGCATTCCTTCACGCAAAGGAGTTGAAAGCTTTGAAGAGTCCATTTGTTCCCTCACTTCTCACTCTGATAAGGAGGTGAAGGATATTTCTCGTATAATCAGACGGAGCTGGGATATGAAAGGATACAATTCAAACTGGAGAAAGGACAAGTTTCCTCCGAATGTAACAACATCACCTGGAAACACACTCAAAGTTCCGGGAAAACATGTGGAAGGTTGTACTACAGATTGTGGACAAGTTATGGTAGAAAAAGGTGATACCCAGGTAAGAGATGATAAAACAAAGAGAAGAATAATTGAGCGTGATGGTGAATGGAATTCATCAAATCAACAAATTTATTCTAGGAAGGGTAAAGAGAAAAGTAATTTAGAGGAGCAAAGGCAACTCCCACAAAATGAGAAACAATGTTCAGATTCTTTGTCAAAAGATCCTTTCCTTGGAGATCATTCAAATGTTCAGGAAGAGAATGTCTGTGGACCCTTTTCGCATTCCAACATTTCAGAGGGAGGAAAGTGGACCCAAGGTTCAAGGAGGAACTTCCATCACAACACGGGTAGAGGGAATCCTAGGTACTTTTCATCTGGCAGGAGTACTGTTTGGCATGATACAGCGCCTCATAAAACTGGAGCAAGCCCTCCAGGTAATCCAAACATGCTAGACAGGAAAATTGAACCACAGCACGGGGCACAAGTTAACACAGTTACAACAACAAATTCCAACAAACCTCTGAATGTTTTATCAGCACCAGCATTGGGAGGAGCTGTTCCAAGTTTTCCACAAGGAAATGGAGTTGTAGATAGACCAACTGAAGAGATGTTATTTCCGAATATGGACTATGCAATTGGTGTACCTCTCCATGTGTTTAATTCTGTTCATGGCTTACCATTTTCCAGATCAATTGAGAACAAAGTTGCAACTACCACTCCTTGCCGTATACCATGTGAGCACTACTCAATGCAACCAACAACAAATACAACGCAGCCATTTCATAGTGCAGGAGGCCCAGCTGCTGTTTATGGTTTTCCTCTCGATCTTGCAGCACATAATTCACGTCCACTTGCATCAACCTTGACAGGACCAGTCCGATTTCCATCCAATGCACATCCAGGAATCAGACCTCCTCAATTCCACCATGTGTCACAGTTGCAAGCCAATCATATATATAAGCATCGTTTCATACATGGATCTGAAAAGAATGATTTGGCTGTGGTGGAGCAAAATAATATACTGGAACCAGAGCCTCCTGTTCCAGGCCTTTCACCACCACATTTACCAGAATACAACTCAGCTCATTACCACTCTCCTTTTGGTCCGGCTCAAGAAATAAATAAAATGCATGATTCTTTTCCTAAAAAAGATTTAGTCTATAAGAGAGATAGCTGTGCAGTATTACCTAATAACAACAATAATCAGGATTCATCCCCAAATCCAAGTGCACAGATTTATGTTAATCTTAATTCAAATTGTGATACTGAAAAACAGGCAACAAAAACATGCACAGTAGATGTCTTCTCTAGCCAAATGCCATGTCCTGTTGATGGTAACACTGTTAGCCGTGCATCTATAAATGGAGCCACTGATTGTAGTTCTCAAAGATCTAGTCCATTGGGCATGGAAGGTGTTTGTCTCAATCCCAAGGGAAAGCATTTTGCAGAAACTGTAGTTTCCTTGAATAATAATCATTCAAATTTTAGTTACCCTTGTGACTTGAAAGGAGCTGGGCAAAACAATTGTTCTTTAAAATATGATGCGAAAGTTGAAGCATGTGAACCTATTATTGATGGACAGAACTTTATTCACAATGGAGAACATAGAGAAGCCAGTAAATTTCCAAACAAATCAATTGAGAGTCTCAGGACTGATAGAGACGTCTGTTCTAGTCATGACAAAAGTATGACAAGGAGTTTCAATACAGCAGATAGAAGCTTTGACATTCAACACAAGTACCCTTCGAATAAGGTGCTTGGGTTTGTTGAAGATGAAAGCACTAATAGAGGCAGTCAAGATACAAAAATAGATAGAGATTCCTGTTCAGATGGAACAAAATATGCACCTCCTGTGGAAGGATCTCGATCTTCAGATGATGGAAAACTGGAATGATGTGAATTGTTCTTCCAAATTTAATTGCTGAACTCGGTATTCTAAAATGGTAGGTAAAGGTGCACCAGTTTGTCTGTCTATTTAATGTTCAAAAGGCATTTCTTCTTCCATTGTTATCCCCACCGTGGGGTGTGTTGTAATATAGACACCTGTAGCAAGCTAGGAAGACAGCCAAAATATGGCTTGTACTCTTCCAATGTTTTCTCTTTCATCTCAAGGCATGCAATAATCTTTGTCC

Ace file of the UniGene sp_v2.0_unigene14801

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	Isoform 2 of Histone-lysine N-methyltransferase ASHH2 OS=Arabidopsis thaliana GN=ASHH2	-	-	0.0	52%
Blast2go	set domain protein	-	-	1.4498e-27	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	carotenoid metabolic process	GO:0016116	Biological Process	1.4498e-27	72%
Blast2go	anther development	GO:0048653	Biological Process	1.4498e-27	72%
Blast2go	regulation of plant-type hypersensitive response	GO:0010363	Biological Process	1.4498e-27	72%
Blast2go	negative regulation of flower development	GO:0009910	Biological Process	1.4498e-27	72%
Blast2go	positive regulation of histone methylation	GO:0031062	Biological Process	1.4498e-27	72%
Blast2go	pollen development	GO:0009555	Biological Process	1.4498e-27	72%
Blast2go	secondary shoot formation	GO:0010223	Biological Process	1.4498e-27	72%
Blast2go	embryo sac development	GO:0009553	Biological Process	1.4498e-27	72%
Blast2go	histone H3-K4 methylation	GO:0051568	Biological Process	1.4498e-27	72%
Blast2go	histone H3-K36 methylation	GO:0010452	Biological Process	1.4498e-27	72%
Blast2go	ovule development	GO:0048481	Biological Process	1.4498e-27	72%
Blast2go	regulation of gene expression, epigenetic	GO:0040029	Biological Process	1.4498e-27	72%
Blast2go	histone methyltransferase activity (H3-K36 specific)	GO:0046975	Molecular Function	1.4498e-27	72%
Blast2go	histone methyltransferase activity (H3-K4 specific)	GO:0042800	Molecular Function	1.4498e-27	72%

Source	InterPros	Term	Type	Identity
Sma3	SET domain	IPR001214	-	-
Sma3	Post-SET domain	IPR003616	-	-
Sma3	AWS	IPR006560	-	-
Sma3	Zinc finger, CW-type	IPR011124	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q2LAE1-2

Fln msg: your sequence is shorter than subject: 784 - 1805

Fln protein: AASGDASGEASGSTRDLSMVLDALLKTESRTVLMDIADKNGLQLLHNLIKQHRKDFNKTPIIRKLVKILHNFADKKVITSEQIKRIPSRKGVESFEESICSLTSHSDKEVKDISRIIRRSWDMKGYNSNWRKDKFPPNVTTSPGNTLKVPGKHVEGCTTDCGQVMVEKGDTQVRDDKTKRRIIERDGEWNSSNQQIYSRKGKEKSNLEEQRQLPQNEKQCSDSLSKDPFLGDHSNVQEENVCGPFSHSNISEGGKWTQGSRRNFHHNTGRGNPRYFSSGRSTVWHDTAPHKTGASPPGNPNMLDRKIEPQHGAQVNTVTTTNSNKPLNVLSAPALGGAVPSFPQGNGVVDRPTEEMLFPNMDYAIGVPLHVFNSVHGLPFSRSIENKVATTTPCRIPCEHYSMQPTTNTTQPFHSAGGPAAVYGFPLDLAAHNSRPLASTLTGPVRFPSNAHPGIRPPQFHHVSQLQANHIYKHRFIHGSEKNDLAVVEQNNILEPEPPVPGLSPPHLPEYNSAHYHSPFGPAQEINKMHDSFPKKDLVYKRDSCAVLPNNNNNQDSSPNPSAQIYVNLNSNCDTEKQATKTCTVDVFSSQMPCPVDGNTVSRASINGATDCSSQRSSPLGMEGVCLNPKGKHFAETVVSLNNNHSNFSYPCDLKGAGQNNCSLKYDAKVEACEPIIDGQNFIHNGEHREASKFPNKSIESLRTDRDVCSSHDKSMTRSFNTADRSFDIQHKYPSNKVLGFVEDESTNRGSQDTKIDRDSCSDGTKYAPPVEGSRSSDDGKLE*

Protein Length: 785

Fln nts: GCTGCATCGGGTGATGCTAGTGGCGAGGCATCTGGCAGTACAAGAGATCTTTCAATGGTGCTGGATGCTTTACTCAAAACAGAATCACGCACTGTGTTGATGGATATTGCAGATAAGAACGGGCTGCAGTTGCTTCATAATTTGATTAAACAACACAGAAAAGATTTCAATAAAACCCCTATTATTCGCAAACTTGTGAAGATTTTGCATAATTTTGCAGATAAGAAAGTCATCACATCAGAACAAATCAAACGCATTCCTTCACGCAAAGGAGTTGAAAGCTTTGAAGAGTCCATTTGTTCCCTCACTTCTCACTCTGATAAGGAGGTGAAGGATATTTCTCGTATAATCAGACGGAGCTGGGATATGAAAGGATACAATTCAAACTGGAGAAAGGACAAGTTTCCTCCGAATGTAACAACATCACCTGGAAACACACTCAAAGTTCCGGGAAAACATGTGGAAGGTTGTACTACAGATTGTGGACAAGTTATGGTAGAAAAAGGTGATACCCAGGTAAGAGATGATAAAACAAAGAGAAGAATAATTGAGCGTGATGGTGAATGGAATTCATCAAATCAACAAATTTATTCTAGGAAGGGTAAAGAGAAAAGTAATTTAGAGGAGCAAAGGCAACTCCCACAAAATGAGAAACAATGTTCAGATTCTTTGTCAAAAGATCCTTTCCTTGGAGATCATTCAAATGTTCAGGAAGAGAATGTCTGTGGACCCTTTTCGCATTCCAACATTTCAGAGGGAGGAAAGTGGACCCAAGGTTCAAGGAGGAACTTCCATCACAACACGGGTAGAGGGAATCCTAGGTACTTTTCATCTGGCAGGAGTACTGTTTGGCATGATACAGCGCCTCATAAAACTGGAGCAAGCCCTCCAGGTAATCCAAACATGCTAGACAGGAAAATTGAACCACAGCACGGGGCACAAGTTAACACAGTTACAACAACAAATTCCAACAAACCTCTGAATGTTTTATCAGCACCAGCATTGGGAGGAGCTGTTCCAAGTTTTCCACAAGGAAATGGAGTTGTAGATAGACCAACTGAAGAGATGTTATTTCCGAATATGGACTATGCAATTGGTGTACCTCTCCATGTGTTTAATTCTGTTCATGGCTTACCATTTTCCAGATCAATTGAGAACAAAGTTGCAACTACCACTCCTTGCCGTATACCATGTGAGCACTACTCAATGCAACCAACAACAAATACAACGCAGCCATTTCATAGTGCAGGAGGCCCAGCTGCTGTTTATGGTTTTCCTCTCGATCTTGCAGCACATAATTCACGTCCACTTGCATCAACCTTGACAGGACCAGTCCGATTTCCATCCAATGCACATCCAGGAATCAGACCTCCTCAATTCCACCATGTGTCACAGTTGCAAGCCAATCATATATATAAGCATCGTTTCATACATGGATCTGAAAAGAATGATTTGGCTGTGGTGGAGCAAAATAATATACTGGAACCAGAGCCTCCTGTTCCAGGCCTTTCACCACCACATTTACCAGAATACAACTCAGCTCATTACCACTCTCCTTTTGGTCCGGCTCAAGAAATAAATAAAATGCATGATTCTTTTCCTAAAAAAGATTTAGTCTATAAGAGAGATAGCTGTGCAGTATTACCTAATAACAACAATAATCAGGATTCATCCCCAAATCCAAGTGCACAGATTTATGTTAATCTTAATTCAAATTGTGATACTGAAAAACAGGCAACAAAAACATGCACAGTAGATGTCTTCTCTAGCCAAATGCCATGTCCTGTTGATGGTAACACTGTTAGCCGTGCATCTATAAATGGAGCCACTGATTGTAGTTCTCAAAGATCTAGTCCATTGGGCATGGAAGGTGTTTGTCTCAATCCCAAGGGAAAGCATTTTGCAGAAACTGTAGTTTCCTTGAATAATAATCATTCAAATTTTAGTTACCCTTGTGACTTGAAAGGAGCTGGGCAAAACAATTGTTCTTTAAAATATGATGCGAAAGTTGAAGCATGTGAACCTATTATTGATGGACAGAACTTTATTCACAATGGAGAACATAGAGAAGCCAGTAAATTTCCAAACAAATCAATTGAGAGTCTCAGGACTGATAGAGACGTCTGTTCTAGTCATGACAAAAGTATGACAAGGAGTTTCAATACAGCAGATAGAAGCTTTGACATTCAACACAAGTACCCTTCGAATAAGGTGCTTGGGTTTGTTGAAGATGAAAGCACTAATAGAGGCAGTCAAGATACAAAAATAGATAGAGATTCCTGTTCAGATGGAACAAAATATGCACCTCCTGTGGAAGGATCTCGATCTTCAGATGATGGAAAACTGGAATGA___TGTGAATTGTTCTTCCAAATTTAATTGCTGAACTCGGTATTCTAAAATGGTAGGTAAAGGTGCACCAGTTTGTCTGTCTATTTAATGTTCAAAAGGCATTTCTTCTTCCATTGTTATCCCCACCGTGGGGTGTGTTGTAATATAGACACCTGTAGCAAGCTAGGAAGACAGCCAAAATATGGCTTGTACTCTTCCAATGTTTTCTCTTTCATCTCAAGGCATGCAATAATCTTTGTCC

Fln Alignment:

Contig14801___RDLSMVLDALLKTESRTVLMDIADKNGLQLLHNLIKQHRKDFNKTPIIRKLVKILHNFADKKVITSEQIKRIPSRKGVESFEESICSLTSHSDKEVKDISRIIRRSWDMKGYNSNWR
Q2LAE1-2_____________RDLSMILDALLKTKSKSVLVDIINKNGLQMLHNIMKQYRGDFKRIPIIRKLLKVLEYLATRKILALEHIIRRPPFAGMESFKDSVLSFTEHDDYTVHNIARSFRDRWIPKHFRKPWR

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
225			80	20	0.995493
226	80		20		0.995493
227	80			20	0.995493
1406	14		85		0.993533
1407		85		14	0.993533
1408		85	14		0.993533
1409	85		14		0.993533
1410	85		14		0.993533
1411			14	85	0.993533
1436	10	90			0.90298
2124	25		75		0.996473
2290		87		12	0.992554
2291	87			12	0.992554
2292		12	87		0.992554
2295		12	87		0.992554
2298	85			14	0.993533
2300	85			14	0.993533
2301	85		14		0.993533
2304			14	85	0.993533
2307		14	85		0.993533
2308		85	14		0.993533
2310		85	14		0.993533
2311	14	85			0.993533
2318		14	85		0.993533
2319		14	85		0.993533
2394	20		80		0.995493
2395			80	20	0.995493
2410	66		33		0.997452
2412	33		66		0.997452
2414	66			33	0.997452
2416	66			33	0.997452
2417			66	33	0.997452
2423		66	33		0.997452
2424		66	33		0.997452
2430			33	66	0.997452
2431	33		66		0.997452
2432	33			66	0.997452
2438			33	66	0.997452
2441			33	66	0.997452
2443	33			66	0.997452
2444			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain