SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene14796

Length: 1779 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene14796

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	WRKY transcription factor, putative n=1 Tax=Ricinus communis RepID=B9RXH5_RICCO	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	43%
Blast2go	wrky transcription	-	-	72%

Source	GOs	Term	Type	Identity
Blast2go	response to chitin	GO:0010200	Biological Process	72%
Blast2go	negative regulation of transcription, DNA-dependent	GO:0045892	Biological Process	72%
Blast2go	cellular response to phosphate starvation	GO:0016036	Biological Process	72%
Blast2go	protein binding	GO:0005515	Molecular Function	72%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	72%
Blast2go	cellular response to boron-containing substance deprivation	GO:0080169	Biological Process	72%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, DHHC-type, palmitoyltransferase	IPR001594	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	DNA-binding WRKY	IPR003657	-	-
Sma3	Adenosine/AMP deaminase active site	IPR006650	-	-
Sma3	TonB box, conserved site	IPR010916	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABY6

Fln msg: Distance to subject end: 35 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 290 - 411

Fln protein: SNTLAETLAPTHHENVGTPQREGSLDRRSSPGWVPNKMQKIVDQTDATIRKARVSVRARTESPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMSPCCPVRKQVQRLAEDRSILITTYEGSHNHMLPPAATAMASTTAAAASMLLSGSSTSADNIALNASFMAGALMQHPCNTSTASISASAPFPTITLDLTHNPNQMANAPGHMAASNPRALAGLPAHAMPFVGMPHQFPTNTPQGALFHGQSIYNAPSMFAPLAGQLQRPQQPMMPTPPKLNIQAGQPPTPQQQQCCQC

Protein Length: 291

Fln nts: CGTCGTGACCTTGGCTGTCACTCACCACGGGGATTGATCTGTCTGTGAAACTTGAGGAGGATGATGATGGAGGGAGGTCTGTGCAGGAGAATGGCAGCCATGGGGAAGCTGAGAAGGATAATGGTTATGATAATCGTACTGCTGAGAAGGATTTCTTCCACCATGAAGTTGGTCGGCTGAGTTTCAGGCTCTTGCCTGTTGATGGTGAGAGCAAGGCCGAGGATGGAACTGCGGACATGATGTCACAAGGCCCAGAGGATGAGGAGGATAAACCTGCAACCAATGTCTCGACTGGATTGAGGTTGGTTAATGTGCAAGCTGCTCGAAACGCTGCAAGTGATCGGTCCACCGTAGAGATGGAAGATTGTGCATCTCCGATCAATTCTCAGGAGACCTCAAATCCTAATGACATGGATGGTGAACCCAATAGCGAGCTGGTCGTGGTTCAAAAGGAGCTAAATCGTATGAACGAGGAAAATCAGAGATTGAGGTTCATGTTGAACCAGATAAATAGCAGCTACAACAATCTGCAGTTGCAGCTGGCTTCCCTCATGAAGCAGCAGCCTCAAAATTATGGTCATGCTGTTAGAGAGCAGGTCCATAAAGAAGAGAAATTGAACATATTCAGAGGAATAACAGGAAATAATATGGGAGAACCACATGCAGATGATCAAACTCAAACTCCAATTCAGAGGCAATTTCTGGAAATTAAAGACTTGTCAAGGCTTAATTCAGGCACTATTGCTCATGAAGACTCTCATACTTCTGAAACTCGAAGGACCCTGACCCATGCAGAAAATGATCAGGAGGAATCAAAAGCGTTAATGGCGTTCAATCATATTGATAATAAGCATGCTCGGGATCATGACAGCCATGGATTAACTTCGAAAGGCCATGACAGCCCTGATCGAACACCCTCGCCGAAACCTTGGCTCCCACTCATCATGAAAATGTAGGAACCCCTCAAAGGGAGGGCAGCCTGGATCGCAGATCATCTCCCGGATGGGTGCCCAACAAGATGCAGAAGATTGTGGATCAAACTGATGCAACTATAAGAAAAGCCCGAGTTTCAGTCCGAGCTAGAACCGAGTCACCCATGATAAGTGATGGTTGCCAATGGAGGAAATATGGACAAAAGATGGCCAAGGGCAATCCATGCCCCAGAGCTTACTACAGGTGCACCATGTCACCGTGCTGTCCAGTGCGCAAGCAGGTGCAACGCCTGGCCGAAGACAGATCGATTCTGATAACAACATACGAGGGCAGCCATAACCACATGCTTCCTCCAGCAGCCACAGCCATGGCATCCACTACAGCAGCAGCTGCCTCAATGCTTCTGTCCGGTTCTTCCACATCAGCTGATAACATCGCACTAAATGCAAGCTTCATGGCAGGTGCCCTCATGCAGCATCCTTGCAACACATCAACTGCTAGCATCTCGGCCTCAGCTCCATTCCCCACTATCACACTGGATCTCACACACAATCCCAACCAAATGGCCAACGCTCCAGGTCACATGGCAGCCTCAAACCCAAGAGCACTAGCAGGACTCCCAGCTCATGCCATGCCTTTTGTAGGCATGCCACACCAATTCCCCACCAACACACCCCAGGGGGCATTATTCCATGGGCAATCAATTTACAATGCTCCTTCCATGTTTGCACCCTTAGCAGGCCAGCTGCAACGCCCCCAACAACCCATGATGCCCACACCACCAAAGCTCAATATTCAAGCTGGCCAACCACCAACACCACAACAACAACAATGCTGCCAATGCCA

Fln Alignment:

Contig14796___LAETLAPTHHENVGTPQREGSL----DRRSSPGWVPNKMQKIVDQTDAT--IRKARVSVRARTESPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMSPCCPVRKQVQRLAEDRSILITTYEGSHNHMLP
D5ABY6_______________LSSTLASDDDMEDGGTNDSKSLGDDGDENESDSKRRKKENNTVDIVAASRAIREPRVVVQTTSEIDILDDGYRWRKYGQKVVKGNPNPRSYYKCT-NAGCPVRKHVERASHDPKAVITTYEGKHNHDVP

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
291	75			25	0.996473
293			25	75	0.996473
294			75	25	0.996473
304		25	75		0.996473
308		25	75		0.996473
309	25		75		0.996473
310		25		75	0.996473
312	75	25			0.996473
353	25	75			0.996473
420	33		66		0.997452
422		33		66	0.997452
624		75		25	0.996473
661	16	33			1.0
663	16			33	1.0
665	66		33		1.0
666	16			33	1.0
668	33	66			1.0
669	66	33			1.0
670		33	66		1.0
671	66			33	1.0
674	66		33		1.0
677		66	33		1.0
678	66			33	1.0
679	66	33			1.0
833	40		60		1.0
1577		40		60	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
1753	1765	ACA ACA ACA ACA A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain