SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene14748

Length: 1265 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene14748

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Homeobox-leucine zipper-like protein n=2 Tax=Picea RepID=Q3HRT1_PICGL	-	-	9.0e-32	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%
Blast2go	homeobox-leucine zipper protein athb-13	-	-	0.0	74%

Source	GOs	Term	Type	Identity
Blast2go	response to sucrose stimulus	GO:0009744	Biological Process	74%
Blast2go	leaf morphogenesis	GO:0009965	Biological Process	74%
Blast2go	cotyledon morphogenesis	GO:0048826	Biological Process	74%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	74%

Source	InterPros	Term	Type	Identity
Sma3	Helix-turn-helix motif	IPR000047	-	-
Sma3	Homeodomain	IPR001356	-	-
Sma3	Leucine zipper, homeobox-associated	IPR003106	-	-
Sma3		IPR012287	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQH8

Fln msg:

Fln protein: MAEMIVSRTSVELQGAVYVSEHDTGDEDGSDESLHVGEKKRRLTFDQVKTLEKSFELRNKLDPVRKMQLAKALGLHPRQISVWFQNRCS*VEKQAAGERFRCSEARIRHSQAEL*YPPATKHTIQS*AAGCGTRERKRERQV*GFRDRIPEKSQDSVHGALNSGMDLSVKSEICIKCTEQQRHDYYSASTKEQEGECCRIMTGAAGSFFDVDSPRTMEISESTGVPQKAVAAAQSFSSVLVAEGSPGAGEEVTACGLTTPLQGLHEWYCQPKVVVDQITAEETKCNLFYSLEEQSAVMLCEYWQTR*

Protein Length: 308

Fln nts: AATGTATTAAAATTTAACTAAAAAATTTAGTTCACCAAAAACTTCAAAAGTTAAACAACGCCCGTCTGCAGCAAGAGCAACTGTATAAGTTCATGTCCATGACATATGATGAAAGGCCCTGCATTTCTTGAAATAGTTGGTGAGTCCACAGAATCAATTTGCTGAAGCT_-_ATGGCTGAAATGATTGTATCTCGCACGTCTGTCGAACTCCAAGGAGCCGTGTACGTGTCGGAACATGACACTGGCGACGAAGATGGATCGGATGAGTCCCTGCACGTTGGAGAGAAGAAAAGGAGGTTGACATTCGATCAAGTGAAAACCCTAGAAAAAAGTTTTGAACTGAGAAACAAGCTGGATCCCGTCCGGAAAATGCAGCTGGCGAAGGCACTAGGTCTGCACCCCAGACAAATATCTGTATGGTTTCAGAATCGGTGTAGCTAGGTGGAAAAGCAAGCAGCTGGAGAAAGATTTCGATGCTCTGAAGCAAGAATACGACACTCTCAAGCGGAACTATGATATCCTCCTGCAACAAAACACACAATTCAAAGCTGAGCAGCAGGGTGCGGAACTAGAGAAAGAAAACGGGAGCGGCAAGTGTAGGGCTTCCGAGACCGTATCCCAGAAAAATCACAGGATTCAGTACATGGGGCACTTAATTCTGGAATGGATTTATCAGTTAAGTCCGAGATCTGTATAAAATGCACTGAACAACAGCGACATGATTATTATTCTGCGAGCACTAAAGAACAGGAAGGTGAGTGTTGTAGAATTATGACTGGAGCTGCGGGTTCTTTTTTTGATGTAGACAGTCCGAGGACGATGGAGATTTCCGAATCAACCGGGGTTCCCCAAAAGGCGGTTGCTGCTGCTCAGAGTTTTTCCTCAGTACTGGTCGCGGAAGGGTCACCGGGCGCCGGAGAAGAAGTAACAGCTTGTGGACTGACAACACCCCTACAAGGTCTGCATGAATGGTACTGCCAACCAAAAGTGGTGGTGGATCAAATTACTGCAGAGGAAACCAAGTGTAACTTGTTTTACAGTTTGGAAGAGCAGAGCGCTGTCATGCTCTGCGAATATTGGCAAACTCGATGA___GTGAAGATAACATGCAATCATGGCGGAAGAGTTTATGGGGTAATTTAATTGGTTATCGTTTTGTTTTGAAATCTCAACATGTAATTATGGTGAAAAGTTTATGGCGCAGTTTAACTGGTAATTTCTTCTTTATGAAATATTATATATAAGCTATGAAAGCCAGTGTTTAAATCCT

Fln Alignment:

Contig14748___TSVELQGAVYVSEHDTGDEDGSDESLHVGEKKRRLTFDQVKTLEKSFELRNKLDPVRKMQLAKALGLHPRQISVWFQNRCS*VEKQAAGERFRC--SEARIRHSQAEL*YPPATKHTIQS*AAGCGTRERKRERQV*GFRDRIPEKSQDSVHGALNSGMDLSVKSEICIKCTEQQRHDYYSASTKEQEGECCRIMTGAAGSFFDVDSPRTMEISESTGVPQKAVAAAQSFSSVLVAEGSPGAGEEVTACGLTTPLQGLHEWYCQPKVVVDQITAEETKCNLFYSLEEQSAVMLCEYWQ
A9NQH8_______________SSTSYSGAMNLSEHDIGEEDGSDDCPHFGEKKRRLTIEQVKTLEKSFELRNKLDPERKMQLAKALGLHQRQISVWFQNRRARWKTKQMEKNFAVLKHEYETLRRNYDILFQKNRQFKDEVQWLSRELKDNDRSSKVSISEIESQKKPANSVPKITDSPMELSVKSEICINFTEQPKHNY-PTTTNEQDGGCCSYMTESASSIFNMDSPRTIESPQSPGIPQMASASANRSSPVLVVEGS-SVGGEVAASVQKTPPPGLHEWHCLPKVEVDQST-EESWCNLLYSLEEQGALMLCEYWR

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
429	50		50		1.0
430	50		50		1.0
431	20	40		40	1.0
432	20		80		0.995493
434	80		20		0.995493
435			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain