SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene14630

Length: 1754 nt

Origin of reads: Inia v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene14630 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	UDP-glycosyltransferase 85A8 [Stevia rebaudiana]	-	-	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	udp-glycosyltransferase 85a2 isoform 1	-	-	65%

Source	InterPros	Term	Type	e value	Identity
Sma3	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LN73

Fln msg:

Fln protein: MSANIDMNTLEKKGNHGLHAVIVPVPAQGHVNALMNLAQLLVIRGSFVTFVNTDWTHKRMAEASKDDKSLVSRDDPEWEQHGQKIRFLSISDGLPPNHGRNSNPSELSIALQNLGPALEDLLTTTSANSPSFPPITFIITDAFMSCTEQVARNMKVPRVIFWPLCAASSVSQCYAHLLLSEGYIPVTEREAKNPEKFITCLPGNIPPLRPTDLLSFYRAEDLSDILLNACLHASQKQSKGDYTLVNTFEELEGRDAVTALALNGCPALAIGPLFLPNFLEGRSSGCSLWEEEDRCLSWLDMQQTGSVIYVSFGSIAVKTQQQLEQLALGLEGCGQPFLWVLRLDIAEGEAAILPAGFEERTKKRAMFVKWAPQVKVLAHASVGLFLTHSGWNSMLESMSMGVPVVGFPYFGDQFLNCRFAKEVWKIGLDFENVDVDDQKLVTKEEVEDVVRRMMRTAEGRMIRDNIVKLKESATKAVLPGGSSFLNLNTFVNDMTMIKVHQSKIETM*

Protein Length: 509

Fln nts: ATACCAGTAAACTGTGGTAGTGGATTAAGGGAAACGATAAGAATA_-_ATGTCGGCCAATATTGATATGAATACGTTGGAGAAAAAGGGGAACCATGGTCTGCATGCAGTAATTGTGCCAGTTCCTGCACAGGGTCATGTAAACGCTCTCATGAATTTGGCCCAACTGCTGGTTATAAGAGGATCTTTTGTCACTTTCGTCAATACTGACTGGACACACAAGCGCATGGCGGAAGCTTCAAAAGACGATAAATCTCTTGTTTCCAGAGACGATCCTGAGTGGGAGCAGCATGGACAAAAAATCCGATTTCTCTCTATTTCTGATGGTTTACCGCCCAACCATGGCCGCAACTCCAACCCGAGCGAGTTAAGTATTGCGCTGCAAAACTTAGGCCCCGCCTTGGAGGATCTCCTCACCACTACCAGTGCAAATTCACCATCATTTCCACCCATCACATTCATCATCACAGACGCCTTCATGTCCTGCACAGAGCAAGTCGCAAGAAATATGAAAGTGCCTAGGGTTATCTTCTGGCCTCTGTGTGCTGCTTCCTCCGTTTCTCAATGCTACGCCCACTTACTTCTTTCTGAGGGATATATTCCAGTAACTGAAAGGGAAGCTAAAAATCCAGAAAAGTTCATCACTTGTCTTCCGGGCAACATCCCACCATTGAGGCCAACAGATCTACTATCCTTCTACCGCGCTGAAGATCTATCCGACATTCTTTTAAATGCCTGTCTCCATGCTTCACAGAAGCAAAGTAAAGGGGACTACACATTAGTGAATACGTTTGAGGAGCTGGAAGGCAGGGATGCAGTAACAGCACTAGCTTTGAATGGTTGTCCTGCTTTGGCCATAGGACCTCTTTTTCTTCCAAATTTTTTAGAAGGTCGGTCTTCTGGCTGCAGTCTGTGGGAGGAGGAGGACCGTTGCCTGTCATGGCTGGATATGCAACAGACGGGATCAGTTATATATGTTTCCTTCGGAAGCATCGCTGTCAAAACACAGCAACAGCTGGAGCAGCTGGCACTAGGGCTAGAGGGCTGCGGACAACCTTTCTTGTGGGTTCTCCGGTTGGATATTGCAGAAGGCGAAGCTGCGATTTTACCTGCGGGGTTTGAAGAACGAACAAAGAAACGGGCAATGTTTGTGAAGTGGGCGCCACAGGTGAAAGTACTTGCCCACGCTTCGGTGGGATTATTTCTCACACACTCTGGATGGAACTCTATGTTGGAGAGCATGAGCATGGGAGTTCCCGTAGTAGGATTCCCATATTTTGGGGATCAGTTTCTGAACTGCAGATTCGCGAAGGAGGTGTGGAAGATCGGGCTGGATTTTGAAAACGTAGATGTGGATGACCAAAAGTTGGTCACGAAAGAAGAGGTGGAGGATGTTGTGAGGAGAATGATGAGAACAGCGGAAGGAAGGATGATCAGAGATAACATTGTCAAACTCAAGGAGTCAGCAACAAAGGCAGTCCTCCCTGGAGGATCTTCTTTTCTAAACCTAAACACATTTGTTAATGACATGACGATGATTAAAGTGCACCAATCCAAAATTGAAACCATGTGA___CTTGGATTCCAGAAGATGTCATTAAACACCTGCCAGATTTGAGACTGATGTATTTGAAATTATCAAATCTCTTTCTAACCCATTGGATTCCTCCACTAGAGGAACCCCCTGTATCTGAACATGCTTGGCGAGGGTTTAAACCTCTGACGTTTTACTACATAAGAAGACCAGTATTATTCATTAGC

Fln Alignment:

Contig14630___MNTLEKKGNHGLHAVIVPVPAQGHVNALMNLAQLLVIRGSFVTFVNTDWTHKRMAEASKDDKSLVSRDDPEWEQHGQKIRFLSISDGLPPNHGRNSNPSELSIALQNLGPALEDLLTTTSANSPSFPPITFIITDAFMSCTEQVARNMKVPRVIFWPLCAASSVSQCYAHLLLSEGYIPVTEREAKNPEKFITCLPGNIPPLRPTDLLSFYRAEDLSDILLNACLHASQKQSKGDYTLVNTFEELEGRDAVTALALNGCPALAIGPLFLPNFLEGRSSGCSLWEEEDRCLSWLDMQQTGSVIYVSFGSIAVKTXXXXXXXXXXXXXXXQPFLWVLRLDIAEGEAAILPAGFEERTKKRAMFVKWAPQVKVLAHASVGLFLTHSGWNSMLESMSMGVPVVGFPYFGDQFLNCRFAKEVWKIGLDFENVDVDDQKLVTKEEVEDVVRRMMRTAEGRMIRDNIVKLKESATKAVLPGGSSFLNLNTFVNDMTMIKVHQSKIETM
B8LN73_______________MNIMNQKGEHALHAVIVPTPAQGHVNALMNLAQLLAIRGVFVTFVNTEWIHERVVEASKKGKSLVSKDNLELEQQGWRIRFLSIPDGLPPNHGRTSNGAELMVSLQKLGPALEDLLSSAQGKSPSFPPITFIVTDAFMSCTEQVATNMSVPRVIFWPLCAAASVSQCYANFLVSEGFIPVNVSEAKNPEKLIICLPGNIPPLKPTDLLSFYRAQDPSDILFKAFLYESQKQSKGDYILVNTFEELEGKDAVTALSLNGSPALAIGPLFLSNFLEGRDSCSSLWEEEECCLTWLDMQQPGSVIYVSFGSIAVKSEQQLEQVALGLEGSGQPFLWVLRLDIAEGQAAILPEGFEERTKKRALFVRWAPQAKVLAHASVGLFLTHSGWNSTLESMSMGVPVVGFPYFGDQFLNCRFAKEVWKIGLDFEDVDLDDQKVVMKEEVEGVLRRMMSTPEGKKMRDNVLRLKESAAKAVLPGGSSFLNLNTFVKDMTMSKGLQSKNETM

SNPs (tot: 3)

Position	A %	C %	G %	Probability
762	94		5	0.998744
1567	92		7	0.999664
1637	9	90		0.999842

SSRs (tot: 1)

Start position	End position	Sequence	Length
832	843	TCC TCC TCC TCC	12

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain