SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene14606

Length: 1100 nt

Origin of reads: Inia v1 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene14606 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Peptide transporter, putative n=1 Tax=Ricinus communis RepID=B9T6M4_RICCO	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	56%
Blast2go	protein	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	pollen tube growth	GO:0009860	Biological Process	86%
Blast2go	dipeptide transport	GO:0042938	Biological Process	86%
Blast2go	dipeptide transporter activity	GO:0042936	Molecular Function	86%
Blast2go	plasma membrane	GO:0005886	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Sma3	Oligopeptide transporter	IPR000109	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Membrane attack complex component/perforin/complement C9	IPR001862	-	-
Sma3	2-oxo acid dehydrogenase, lipoyl-binding site	IPR003016	-	-
Sma3	PTR2 family proton/oligopeptide symporter, conserved site	IPR018456	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVR2

Fln msg: Separated hits, possible frame ERROR between 152 and 157, your sequence is shorter than subject: 253 - 594

Fln protein: TIAVFSIVYFFGMTLLTISASVPKLKPPCKASDVNCHLTTGQTGVFFLSxxxSLSIFDTLSVIFWVPVYDRLIVPFVRKYTGHERGFTQLQRMGIGLVISIFSMVIAAIVEIKRLDMVKENNYYERTTIPMSIFWQVPQYFLIGAAEIFTYIGELEFFYDQAPDAMRSLMSAVSLTTVALGNYLSTLLVTIVTDITTRNGKVGWIPNNLNYGHIDYFFWLLAILSGLNFLVYLLIARWYTYKRPTGVFHVSK*

Protein Length: 254

Fln nts: AAACAATTGCTGTGTTTTCTATTGTGTATTTTTTTGGAATGACCTTGTTGACTATATCTGCATCTGTGCCTAAACTTAAGCCTCCCTGCAAAGCTTCAGATGTTAATTGCCATTTAACAACAGGTCAAACTGGTGTTTTCTTCTTGTCACTxxxxxxATCATTATCTATATTTGATACTCTCAGTGTCATATTCTGGGTTCCAGTTTATGACCGTCTAATTGTTCCATTTGTACGCAAATATACTGGTCATGAAAGGGGCTTTACCCAACTACAGCGTATGGGGATTGGCTTGGTCATTTCTATTTTTTCCATGGTGATTGCAGCCATTGTTGAGATCAAGAGACTCGACATGGTCAAGGAGAATAACTACTATGAAAGAACAACCATACCCATGAGCATTTTTTGGCAGGTTCCCCAGTATTTCTTAATAGGTGCTGCTGAAATTTTCACCTACATAGGGGAACTAGAGTTCTTTTATGATCAAGCACCTGATGCTATGCGGAGCTTAATGAGTGCAGTTTCACTTACTACAGTGGCACTGGGAAACTACCTGAGTACTCTGCTGGTTACCATTGTAACTGACATTACAACAAGGAATGGAAAAGTAGGATGGATTCCCAATAACTTGAACTATGGACATATTGATTACTTCTTTTGGCTTCTGGCCATCCTAAGCGGTCTGAATTTTCTGGTCTATCTTTTAATTGCACGTTGGTACACATACAAGAGACCCACAGGAGTGTTCCACGTAAGCAAGTAAGCCTATTCATTCGGAAGGTGCACTAGCAGCCCCTCTAGTGTCGTACAAATATATTCTGCAGATGTGATGCTGCTGAAAGAAGGAAATTGGACTTTTGTTTCCTATTATAACTAAGCAAATGCAACCATTGTAGTGGTCTGCAATGGAAACATACTGTATAAGATGTGCAAAAGATCTTCTGTTTGACTGTTTCTTGAGGAGAGACTTGTTCACTAGCTTCTCAACAAAACTGAGACATATTTCTATTTGGATGACGAGCTGCCAACTTTGTTTTTTTGTATATAAATATGATTGATTGCCACAATTATCTTTATTAATATATGATGATTGTCTTCTTTTAC

Fln Alignment:

Contig14606___TIAVFSIVYFFGMTLLTISASVPKLKPP-CKASDVNCHLTTGQTGVFFLSLxxSLSIFDTLSVIFWVPVYDRLIVPFVRKYTGHERGFTQLQRMGIGLVISIFSMVIAAIVEIKRLDMVKENN--YYERTTIPMSIFWQVPQYFLIGAAEIFTYIGELEFFYDQAPDAMRSLMSAVSLTTVALGNYLSXXXXXXXXXXXTRNGKVGWIPNNLNYGHIDYFFWLLAILSGLNFLVYLLIARWYTYKR
A9NVR2_______________TIAAFSTIYFIGMATLTLSASVSSLKPPSCIGSDCPT-ANLAQYGVFFLGLxxSLSVFDVVSVMIWVPVYDRVIVPIVSKYTKRERGFTELQRMGIGLFISILAMVAAALVEIRRLNIVKTYDLVYDKGTPVPMSIFWQIPQYFLVGASEVFTFVGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSLIVTIVMFATTKGGNIGWIPDNLNEGHLDYYFWVLASLSVLNLLVYVSCAHRYKYKK

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
202		85		14	0.993533
541	90		10		0.90298
838	14		85		0.993533
839		14		85	0.993533
841	85			14	0.993533
842	85			14	0.993533
851		60	40		1.0
854			40	60	1.0
871	60		40		1.0
875	60	40			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain