SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene14586

Length: 2344 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene14586
CAGCCAACACAATATAAGAGCGTATCTCCATTGTTATGGGTGGGCCCAAATGTATATTATATGCTCTGGTTCATGGTTCAGTTAGATTTGTTGTTAACCCTGACAGAAAATCTGCCGAAGAGCTCAGAAATCCAACAGAATGGCATCCAAACCAGGGCCGCTTACACAATGGCCATGGGAAAAACTTGGCAACTTCAAGTACTTCCTGTTGGCACCATTGGTGATCAGGGCTGTCCATACCAATTTCCTGGGAGGACAAGAGGCAGATAATTTCAGTTTGGGAATTCTCATCTTTGTTGCTGTTAGATACCTTCATAACCAGTTATGGATAAGCATTTCTAGGTATCAGAATGCAAGGAGTAAGCACCAGATTCAATCCAAAAGTATCCAGTTTGAGCAAGTTGATAGAGAAGGAACCTGGGATGATTATATTCTGTTATATGCCTTCTTGTTTATTCCAATTCATGCCTTCTTACCTGGAGCTTCCAATCTCCCTATGTGGAATTGGAAAGGTCTGGTCGTTGCAACTTTGGCTCACATTGGGCCATCAGAGTTCATATATTACTGGGCCCATAGAGCTTTGCATCATCACTTTCTATACAACATGTACCATTCACATCACCACTCTTCTTTTGTAACAGAACCAATTACATCCGTGGTGCATCCATTTGCAGAACACTTGATGTATGCAACCATGTTCTCCATAGCTCCCCTCGCTGCAGTTGTCACCAACACTGCTTCCATTGGTCTTGTGCTTGGCTACATGACATGGTTTGATTTCATGAACAATATGGGGCACTGCAATTTCGAGTTTGTTCCCTCTTGGGCATTTAAGATCTTTCCTCCTCTGAAATACCTAGTGTATACACCCTCATTTCACTCTCTACACCATTCTCAAGTCCACACCAACTTCTGTCTTTTCATGCCACTGTATGACTATTTGTATGGAACAGTGGATAAATCTTCTGATACTCTCTATGAATCTGCATGGGAAGGTCGCAAGGAGAAAGTTGATTTTGTGTACCTGACTCATATGACAACTTTACTATCCTTTTTTCACTTGAGATTCGGTTTTGCCTCATTTGCTGCAAAGCCATACTCTTCCCAATGGTATTTGTGGATCTTGTGGCCGATCAGCAATGCAATCATGCTTCTCCTGTGGATTTTTGGACGAACCTTTACAGTTGAAAAGAATCGGTTGGATCATGTGAATATTCAAACGTGGGTGCTCCCAAGATACATTTTCCAGTACATTTTACCTTCTGAAAGACCAAGGATCAACGAACTTATTGAAGATTCCATTCTGGAAGCGGAGAGGAAGGGAGCAAAAGTTATAGGTTTAGGCCTCCTCAATAAGACCGAGGACCTGAATGGCAGTGGAAAACTGTTTCTCAAGCGCCACGAGGATCTCAAAATACGTATTGTTGATGGCAATACATTAGCTGCTGCCTGTGTTTTGAATTCAATTCCAGAGAAAGAATCGGAGGTGCTTGTGACGTATGGGGGAGTCTCCAAGTTGGGATGCGGAATTGCTAAGGTGCTCTGTGAACGGGGGGTGAAGGTCCAGCTTCTAGTGGATTCAGAAGAACAGTTCGAGAAAATACAGCTGGGAGTGACCCCGGAATTTAAAGATAACCTCTTCCGTGCTACAAGTTACCAGTCATGCAGTACCTGCAAGACATGGATAGTAGGAAGACTGCTTAATCAAGAAGATCAGATGAAGGCACCGAAGGGCACTCGCTTTATTCCGTTTCTTCCTTTTCCGCTACCAAATGCTCGCAAGGACTGCACTTACGAGAACGTTCCTGCAATGCGTGTGCCCAAGAGTCTTGAGAATCTGCATGCCTGCGAGAACTGGCTGCCTAGGAGAGTGATGAGCGCATGGCGTGTGGGAGGAATTGTGCATGCACTGCAGGGATGGAATCATCATGAATTTGAATACACCATTGACAATGGCAGCGTTATTAGAGCGTGGGAAGCTGCACTGAAACATGGCTTTCTTCCTTTCCATTCCATTAAAACCAGTTAATGAAGGGATGATATATACAAAGGTGGCAGCCAATTAAGCTTTCAAACTATGCGTGTTATAGAGAACATAGTAGGTGAAACTTCATATAGTTATACTAAATAAAACGCCGGCTTCCGAATCCCACCACTAAATACGTAGTTGTAAGTTTTATTTTGTGTTTCAGAGTTCACAATAATGGATGCTTTGAAGTATTTGCGTTTTACAGTTTTTCTAAGTGAAAAACGTACTGTAATGTGTAAACATTTTGCGTGAAGGATATTTATGGTTTGTTACTTATTGGGTAATTGTGACATTTATTGGTGACTGATTGGTGTA

Ace file of the UniGene sp_v2.0_unigene14586 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Wax2_C multi-domain protein	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	43%
Blast2go	protein wax2-like	-	-	69%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Fatty acid hydroxylase	IPR006694	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A835

Fln msg:

Fln protein: MASKPGPLTQWPWEKLGNFKYFLLAPLVIRAVHTNFLGGQEADNFSLGILIFVAVRYLHNQLWISISRYQNARSKHQIQSKSIQFEQVDREGTWDDYILLYAFLFIPIHAFLPGASNLPMWNWKGLVVATLAHIGPSEFIYYWAHRALHHHFLYNMYHSHHHSSFVTEPITSVVHPFAEHLMYATMFSIAPLAAVVTNTASIGLVLGYMTWFDFMNNMGHCNFEFVPSWAFKIFPPLKYLVYTPSFHSLHHSQVHTNFCLFMPLYDYLYGTVDKSSDTLYESAWEGRKEKVDFVYLTHMTTLLSFFHLRFGFASFAAKPYSSQWYLWILWPISNAIMLLLWIFGRTFTVEKNRLDHVNIQTWVLPRYIFQYILPSERPRINELIEDSILEAERKGAKVIGLGLLNKTEDLNGSGKLFLKRHEDLKIRIVDGNTLAAACVLNSIPEKESEVLVTYGGVSKLGCGIAKVLCERGVKVQLLVDSEEQFEKIQLGVTPEFKDNLFRATSYQSCSTCKTWIVGRLLNQEDQMKAPKGTRFIPFLPFPLPNARKDCTYENVPAMRVPKSLENLHACENWLPRRVMSAWRVGGIVHALQGWNHHEFEYTIDNGSVIRAWEAALKHGFLPFHSIKTS*

Protein Length: 631

Fln nts: CAGCCAACACAATATAAGAGCGTATCTCCATTGTTATGGGTGGGCCCAAATGTATATTATATGCTCTGGTTCATGGTTCAGTTAGATTTGTTGTTAACCCTGACAGAAAATCTGCCGAAGAGCTCAGAAATCCAACAGA_-_ATGGCATCCAAACCAGGGCCGCTTACACAATGGCCATGGGAAAAACTTGGCAACTTCAAGTACTTCCTGTTGGCACCATTGGTGATCAGGGCTGTCCATACCAATTTCCTGGGAGGACAAGAGGCAGATAATTTCAGTTTGGGAATTCTCATCTTTGTTGCTGTTAGATACCTTCATAACCAGTTATGGATAAGCATTTCTAGGTATCAGAATGCAAGGAGTAAGCACCAGATTCAATCCAAAAGTATCCAGTTTGAGCAAGTTGATAGAGAAGGAACCTGGGATGATTATATTCTGTTATATGCCTTCTTGTTTATTCCAATTCATGCCTTCTTACCTGGAGCTTCCAATCTCCCTATGTGGAATTGGAAAGGTCTGGTCGTTGCAACTTTGGCTCACATTGGGCCATCAGAGTTCATATATTACTGGGCCCATAGAGCTTTGCATCATCACTTTCTATACAACATGTACCATTCACATCACCACTCTTCTTTTGTAACAGAACCAATTACATCCGTGGTGCATCCATTTGCAGAACACTTGATGTATGCAACCATGTTCTCCATAGCTCCCCTCGCTGCAGTTGTCACCAACACTGCTTCCATTGGTCTTGTGCTTGGCTACATGACATGGTTTGATTTCATGAACAATATGGGGCACTGCAATTTCGAGTTTGTTCCCTCTTGGGCATTTAAGATCTTTCCTCCTCTGAAATACCTAGTGTATACACCCTCATTTCACTCTCTACACCATTCTCAAGTCCACACCAACTTCTGTCTTTTCATGCCACTGTATGACTATTTGTATGGAACAGTGGATAAATCTTCTGATACTCTCTATGAATCTGCATGGGAAGGTCGCAAGGAGAAAGTTGATTTTGTGTACCTGACTCATATGACAACTTTACTATCCTTTTTTCACTTGAGATTCGGTTTTGCCTCATTTGCTGCAAAGCCATACTCTTCCCAATGGTATTTGTGGATCTTGTGGCCGATCAGCAATGCAATCATGCTTCTCCTGTGGATTTTTGGACGAACCTTTACAGTTGAAAAGAATCGGTTGGATCATGTGAATATTCAAACGTGGGTGCTCCCAAGATACATTTTCCAGTACATTTTACCTTCTGAAAGACCAAGGATCAACGAACTTATTGAAGATTCCATTCTGGAAGCGGAGAGGAAGGGAGCAAAAGTTATAGGTTTAGGCCTCCTCAATAAGACCGAGGACCTGAATGGCAGTGGAAAACTGTTTCTCAAGCGCCACGAGGATCTCAAAATACGTATTGTTGATGGCAATACATTAGCTGCTGCCTGTGTTTTGAATTCAATTCCAGAGAAAGAATCGGAGGTGCTTGTGACGTATGGGGGAGTCTCCAAGTTGGGATGCGGAATTGCTAAGGTGCTCTGTGAACGGGGGGTGAAGGTCCAGCTTCTAGTGGATTCAGAAGAACAGTTCGAGAAAATACAGCTGGGAGTGACCCCGGAATTTAAAGATAACCTCTTCCGTGCTACAAGTTACCAGTCATGCAGTACCTGCAAGACATGGATAGTAGGAAGACTGCTTAATCAAGAAGATCAGATGAAGGCACCGAAGGGCACTCGCTTTATTCCGTTTCTTCCTTTTCCGCTACCAAATGCTCGCAAGGACTGCACTTACGAGAACGTTCCTGCAATGCGTGTGCCCAAGAGTCTTGAGAATCTGCATGCCTGCGAGAACTGGCTGCCTAGGAGAGTGATGAGCGCATGGCGTGTGGGAGGAATTGTGCATGCACTGCAGGGATGGAATCATCATGAATTTGAATACACCATTGACAATGGCAGCGTTATTAGAGCGTGGGAAGCTGCACTGAAACATGGCTTTCTTCCTTTCCATTCCATTAAAACCAGTTAA___TGAAGGGATGATATATACAAAGGTGGCAGCCAATTAAGCTTTCAAACTATGCGTGTTATAGAGAACATAGTAGGTGAAACTTCATATAGTTATACTAAATAAAACGCCGGCTTCCGAATCCCACCACTAAATACGTAGTTGTAAGTTTTATTTTGTGTTTCAGAGTTCACAATAATGGATGCTTTGAAGTATTTGCGTTTTACAGTTTTTCTAAGTGAAAAACGTACTGTAATGTGTAAACATTTTGCGTGAAGGATATTTATGGTTTGTTACTTATTGGGTAATTGTGACATTTATTGGTGACTGATTGGTGTA

Fln Alignment:

Contig14586___LTQWPWEKLGNFKYFLLAPLVIRAVHTNFLGGQEADNFSLGILIFVAVRYLHNQLWISISRYQNARSKHQIQSKSIQFEQVDREGTWDDYILLYAFLFIPIHAFLPGASNLPMWNWKGLVVATLAHIGPSEFIYYWAHRALHHHFLYNMYHSHHHSSFVTEPITSVVHPFAEHLMYATMFSIAPLAAVVTNTASIGLVLGYMTWFDFMNNMGHCNFEFVPSWAFKIFPPLKYLVYTPSFHSLHHSQVHTNFCLFMPLYDYLYGTVDKSSDTLYESAWEGRKEKV-DFVYLTHMTTLLSFFHLRFGFASFAAKPYSSQWYLWILWPISNAIMLLLWIFGRTFTVEKNRLDHVNIQTWVLPRYIFQYILPSERPRINELIEDSILEAERKGAKVIGLGLLNKTEDLNGSGKLFLKRHEDLKIRIVDGNTLAAACVLNSIPEKESEVLVTYGGVSKLGCGIAKVLCERGVKVQLLVDSEEQFEKIQLGVTPEFKDNLFRATSYQSCSTCKTWIVGRLLNQEDQMKAPKGTRFIPFLPFPLPNARKDCTYENVPAMRVPKSLENLHACENWLPRRVMSAWRVGGIVHALQGWNHHEFEYTIDNGSVIRAWEAALKHGFLP
D5A835_______________LLDWPWAYLESLKYVLYGPLIAKAVHTNLYGGKEADNWCFHILLLTSLRYVTYQLWATFSNMYCLSHRYKICKKGAEFDQMDREWDWDNFLLLQAFMATAAHHFLPFFRDMPAWNAGGLICLAILRMGPAEVLYYWAHRAFHKDFLFQRYHSLHHAAIVLQPQTAGTATFLEHIGLTIIMAVPMVGASWMGGASMGMIYIYCLLFDFLRYMGHSNVEIVPETIFRCLPPLKYLIYTPLYHTLHHTEMDTNFCPFMPLYDYLGHTINSKSWDLHRSMSAGQVEDVPDYVFLAHIVDVLSSLHVRFLLRGFCSTPFATWWFLLPLWPVVIPVALAMWVWAKTFVNTGHRLKGRLHQTWIVPRFGFQYFIPFAQAGINNLIQDAILSADKMGVKVISLAALNKNEALNGGGTLFVNRLPDLRVRVVHGNTLTAAVILNELNPDVKEVFLT-GATSKLGRVIALYLCRKGIRVMMLTYSKERFKSIQSEAPPEFQNFLVQVTKYEAAQNCKTWIVGKWIAYKEQTWAPVGCHLHQFVVPPIFELRKDCTYGKLAGMQLPDAVEGLSTCEYTMPRRCVHACHAGGILHSLEGWEHHEVG-AIDVNKIDMVWEAALKHGFKP

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
2302		16	66	16	0.988813
2303		16		83	0.994512
2304		33		66	1.0
2305	33	66			1.0
2306		66		33	1.0
2307		80	20		0.995493
2308	20	80			0.995493
2309	40		20	40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain