SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene14568

Length: 521 nt

Origin of reads: Biogeco2 v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene14568
GAAGAGATGCTTGATAGGAATGAAACGGGAAACATTCAGAAAGAAGAGATGGCAATTGATTCTCAGGATCATCTATCTGACCCTAACACAGGTACTCAGGCGGGATCAAATGTGTCAGGTGATACAATTGTGATCCCGACGAAAGATGCTGATAAAGAAATGCAAAATGATTCAGAATGTATGGATGGCAGGGATGGTGAACACAATATTAGTCTTCAAGGTGGCATAGAATCGCCTACAGGGGCTGATTTAGTTGAATCGACATCTGGTAAAATTGATATGGAACAGATAGAGGAGGAAGTTATAGTGCCTAGCTTATCCAATTCTACTTGTCATGACCCAGGTCACTTCAAACACTTTGATAGTGTAAGGGACTCTGTGGGACATTACTATCTGAATGAAACAGGCCAGCCTATTAATGAGCGGAAATGGATGAAGAAAATTCAGCAAGAATGGAACATCCTTGAAAAAAATTTACCAGACACAATTTATGTGAGAATCTATGAGGATAGGATGGATTT

Ace file of the UniGene sp_v2.0_unigene14568

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	sp=Probable ubiquitin-conjugating enzyme E2 23; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	37%
Blast2go	protein	-	-	9.14712e-20	56%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ubiquitin-conjugating enzyme, E2	IPR000608	-	0.0	-
Sma3	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9ZVX1

Fln msg: Distance to subject end: 221 aas, your sequence is shorter than subject: 173 - 1102

Fln protein: EEMLDRNETGNIQKEEMAIDSQDHLSDPNTGTQAGSNVSGDTIVIPTKDADKEMQNDSECMDGRDGEHNISLQGGIESPTGADLVESTSGKIDMEQIEEEVIVPSLSNSTCHDPGHFKHFDSVRDSVGHYYLNETGQPINERKWMKKIQQEWNILEKNLPDTIYVRIYEDRMD

Protein Length: 174

Fln nts: GAAGAGATGCTTGATAGGAATGAAACGGGAAACATTCAGAAAGAAGAGATGGCAATTGATTCTCAGGATCATCTATCTGACCCTAACACAGGTACTCAGGCGGGATCAAATGTGTCAGGTGATACAATTGTGATCCCGACGAAAGATGCTGATAAAGAAATGCAAAATGATTCAGAATGTATGGATGGCAGGGATGGTGAACACAATATTAGTCTTCAAGGTGGCATAGAATCGCCTACAGGGGCTGATTTAGTTGAATCGACATCTGGTAAAATTGATATGGAACAGATAGAGGAGGAAGTTATAGTGCCTAGCTTATCCAATTCTACTTGTCATGACCCAGGTCACTTCAAACACTTTGATAGTGTAAGGGACTCTGTGGGACATTACTATCTGAATGAAACAGGCCAGCCTATTAATGAGCGGAAATGGATGAAGAAAATTCAGCAAGAATGGAACATCCTTGAAAAAAATTTACCAGACACAATTTATGTGAGAATCTATGAGGATAGGATGGATTT

Fln Alignment:

Contig14568___EMQNDSECMDGRD--GEHNISLQGGIESP-TGADLVESTSGKIDMEQIEEEVIVPSLSNSTCHDPGHFKHFDSVRDSVGHYYLNETGQPINERKWMKKIQQEWNILEKNLPDTIYVRIYEDRMD
Q9ZVX1_______________ESTNPSDETDSLDDPSPSKVNVTDNCESKGTQANAKNILSGETSTFLEDEDKPVPSEGDSCS-----FRRFDISQDPLDHHFLGVDGQKTKERQWFKKVDQDWKILQNNLPDGIFVRAYEDRMD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain