SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene14458

Length: 973 nt

Origin of reads: Biogeco3 v1

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene14458

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Sentrin/sumo-specific protease, putative n=1 Tax=Ricinus communis RepID=B9SH87_RICCO	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	33%
Blast2go	ubiquitin-like-specific protease 1c	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	protein desumoylation	GO:0016926	Biological Process	71%
Blast2go	proteolysis	GO:0006508	Biological Process	71%
Blast2go	response to salt stress	GO:0009651	Biological Process	71%
Blast2go	vegetative to reproductive phase transition of meristem	GO:0010228	Biological Process	71%
Blast2go	SUMO-specific protease activity	GO:0016929	Molecular Function	71%
Blast2go	nucleus	GO:0005634	Cellular Component	71%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase C48, SUMO/Sentrin/Ubl1	IPR003653	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
477	16			83	0.994512
478	16			83	0.994512
481	75			25	0.996473
521	75			25	0.996473
639		33	66		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
952	965	GAG GAG GAG GAG GA	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain